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52-1002-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29446808 [Map]; Strand: w
      • AT1G78260.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -177; Region: promoter
      • AT1G78260.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -177; Region: promoter
    Flanking Genome Sequence: 52-1002-1 - 3-prime edge 
    ATTATAGCTC CTCCACAACT TTTTATTCAG AAATCTTCTT TTTAATTATA 
    ACGACGTTCT TCTGATGTAT ATATATTTAA TATTTTTATG TAATATGCAG 
    ATTTAATTCT TTCTTAACTA TATATCTTAA ATACTAAAGG TACATAATTT 
    ACCAGATGTC ACGTAGTTTT TGTTATTTTT GAATTAGTAT AACCAACGNN 
    AGATTTTGAA AATACTCATT TTTGGATGTT ATTAGAAACA AACTTATAAT 
    GTTAATACTG ATTCTTACAT TCTTCAATCA AAGATTGGAG AATAATGTAT 
    GCTATGATGT GTCATTATTA GAAAGTTATT GAATATTTTG ATGTTTCTAA 
    TTGTGTAGAA TTTTTAGGGG TGATTTAAGG AAAAATATCT TAAATCCTTG 
    TAGTAAGTAG TATTTAATAA TATGCAGATT TTGTCAAAAC TACAGTTGTT 
    TGATAAGTTC TATATTTTGT TTTATCATTT CCCATGTTCA CTTTTGAGTT 
    GGTCTCTTGT TCTCTTCCTC CTGCTTGTCT CTGTAGGTTT CGTGTGATAC 
    ATATAGACCA ATAATAGTTA TATTTCTTTT CACATGAAAT TAATATATAC 
    TTTTCTATAT TAGTTTAGAA GCATATGTAT ATTTTTTTGT ATTGAATAAT 
    GGAACTTATT CCCTATTCTC ACATGCTAAC ATGTACTTAA CCTTCCTTTA 
    ATCATTAGCT TACTGGAAA

AT1G78260.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G22330.1); Has 19754 Blast hits to 15639 proteins in 805 species: Archae - 2; Bacteria - 1288; Metazoa - 9939; Fungi - 2340; Plants - 4423; Viruses - 0; Other Eukaryotes - 1762 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78260.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G22330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR