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52-1029-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7890601 [Map]; Strand: w
      • AT5G23420.1 - [+] show detail - high-mobility group box 6
        Distance: -421; Region: promoter
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: -421; Region: promoter
    Flanking Genome Sequence: 52-1029-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAG GTGTGGTGCA GAGAGGTGAG AAGACTTTTG 
    AAGGGTTTTA GGGTGATGGG AAGGTGAAAT ATAAGCAGTT CTCTCGCTTA 
    CTGTGCCACC ACCACCACCA ACGTCAGAGA ATCTCAGCTC CTATACTCTT 
    CTCTTCTCTC TCTTTCAAAT CTCTTTTTTT TTAACTCATT TTCTATACAT 
    TTTTACAAAT TTCAGAGTAA TAGTATTATC TGATTGTAGT TACGTCTATA 
    ATCCAAGTTA TGATGGATGG ATTTGGGGAA TATCTAATAG TTAAACTGTT 
    TAAACTCTAT CTTCTTCTTC TTTGTTTTTT GGTGTTTTGT GTTGTTTGTC 
    TTACTTATAC TAACTTTCAC TCTCTCCAAT ATGATAATCA TTGGGAGATT 
    ATGGAATAAC TTTCTTACCT CCAGCAGAAT ATAAATAAAT TTAACACAAT 
    TTAATACTAT CTTTTTTTGT TTTTTGTTCA ACACATACAA TTTAAAATCA 
    TAAACACATC TCTCCATCAA AGAAGTAAAA CGATAGTTTG ATATATCTCA 
    TACACTTAAA CATTAGCCTA AGAGAAGATG ATGATTAACT TAAACAAAAG 
    TTGTTAAATA GTAACCTAAT ACATAGAAGA ATAACAACAA CCCAAGAAAG 
    ATACATATTT CACAAAGTTG ATAAAAGAAA CCAACAAGAG GACATGCATA 
    AATATAGAAT GTTGTTCTTT TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7890598 [Map]; Strand: w
      • AT5G23420.1 - [+] show detail - high-mobility group box 6
        Distance: -418; Region: promoter
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: -418; Region: promoter
    Flanking Genome Sequence: 52-1029-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTG 
    CCCACATGCC TATCTCTATC TTCCTTATAG CCTTTTTTCA CTTTTACCGT 
    TATCAACTTT TTACTATTCT TTACTTTAAA TCAATCATTT TCTAATTATG 
    TGGAAAAATA TTTATATCGG GCCGGACTAA TTTTGGTTAT AATAATATTT 
    AAGCCTATAA TGGGCCTCAA AACCTAAAGC CCATCTAAAC AAAGAAAAAC 
    CGCGAATAAA TGGGACGCGA ACATCATATC CAGATCTAGA CCGTTTATTC 
    GCTTTATACA ATACCAACGG TGGATTAGAA CGCCACGTCA ACAATCCGTG 
    TCAAAGCCTA AAAACACAGT ATCGCGGGAT CAGATTGGCG CCATAACTGA 
    GAAAACAAGT TTCGTTTCCC TCTCATTTTC CTCCCTTTTC TTCTCCACCG 
    AGTCTCTCAA ACGTTTCTCA TCGAATCGAA TT

AT5G23420.1

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG-box (high mobility group) DNA-binding family protein (TAIR:AT5G23405.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23420.2

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR