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52-1034-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8779872 [Map]; Strand: w
      • AT1G24880.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G24879.1 - [+] show detail
        Distance: -972; Region: promoter
    2. Chromosome: 1; Position: 8802400 [Map]; Strand: w
      • AT1G25054.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G25054.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron2 (5UTR)
      • AT1G25053.1 - [+] show detail
        Distance: -900; Region: promoter
    3. Chromosome: 1; Position: 8816778 [Map]; Strand: w
      • AT1G25141.1 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: -900; Region: promoter
    4. Chromosome: 1; Position: 8831156 [Map]; Strand: w
    Flanking Genome Sequence: 52-1034-1 - 5-prime edge 
    GTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTTCT AATACCACTC CTTAATATAT GCCTATCATA 
    TCATTATTTC ACAACGCATG TTTACTTTTG TTATGAAATA GTTTTGTTTA 
    AAGGGTGGTA ACGTAATTTA TGGGTTCCAT TAGGATTGTG ATTTATTTTC 
    TCTCCTCATC CTTATGCATG TAAGAATTTG CATTTTTATA AATATATACT 
    ATGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9381326 [Map]; Strand: c
      • AT1G27030.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -477; Region: promoter
    Flanking Genome Sequence: 52-1034-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGATCCTTG GCTTTTTTTC CCACTCTTTC TAGCTGTATA AAATACGAAT 
    TTACGATAAG ATATTAGAAA AACCAAACAA AGCTGTGTTT CTCTCGTACA 
    CTTAAAGCAT CGTCCCGCAA CGGTTCTCTT GACTTGCCAA ACGTTTCATA 
    ATTAAATTTT TTCTCTAATT ATGATTTACA AAAACAAAAA TCACGATAAT 
    CCATGATCTA ACTATAAGAG GGAGTAAGAG AAACATTTCA CTTGGTTTTT 
    CTTACTGAGT ACTGATATAA ATAAATATAG AATCAGACAA AGATTCGTTT 
    GCTGAACGAT TTTATATAAA TTTAGTCCTT ACCTGCGCAG CTAATCATCG 
    TGAGCGGAGC GACTATGCGT CAAGAAAAAA AAANCTAAAA TACTANTAAT 
    TAAGGGACTC CTTCTCTCTC CTTTTTTTTN GGGGNNNGCC CCACCCTTTT 
    TTTNTAAGTT TANGCNNNAN TAATTANGAA CANCNNNGCN ANCGGCTNAT 
    TTTTNNNAAA CAACNCAANC NNGGGTNCNT TNNANTNGCC NNNNANTNNA 
    NANNNAANGG GNTTTTTNNA AATTNTTTTT TTTNAAAGNA NAAAANNTTT 
    NGGNCCNANN ATNNCNNNNN GGGNNTNNNG GGGNAAGGGN NNTTTTNNNN 
    NNNAAGGGNN NNGGAAANNT NTNNANACNN NCCNNNNNNN NANCNNNNNG 
    GNAANANNNN NNNGGNNGGG GGNNNNNNNN NGNC

AT1G24879.1

Model type
Pseudogene
Curator Summary
pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related
Link
InterPro Scan - TAIR

AT1G24880.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25053.1

Model type
Pseudogene
Curator Summary
pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related
Link
InterPro Scan - TAIR

AT1G25054.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5320 Blast hits to 5320 proteins in 1417 species: Archae - 0; Bacteria - 2992; Metazoa - 1; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.2

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25141.1

Model type
Protein coding
Short Description
F-box associated ubiquitination effector family protein
Computational Description
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G47300.1); Has 7236 Blast hits to 6390 proteins in 1409 species: Archae - 0; Bacteria - 2915; Metazoa - 1; Fungi - 0; Plants - 2305; Viruses - 0; Other Eukaryotes - 2015 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25209.1

Model type
Pseudogene
Curator Summary
pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related
Link
InterPro Scan - TAIR

AT1G27030.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27020.1); Has 504 Blast hits to 502 proteins in 169 species: Archae - 0; Bacteria - 299; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR