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52-1037-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26467896 [Map]; Strand: c
      • AT1G70280.1 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G70280.2 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-1037-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CGATTGTGCT TTTGTCATCA CTTCAAACTG 
    AATGCACATG GGGACTATAG TACAAAAAGA TGCTGCATAT GGAAAAATTG 
    ATGGAATTTT TTGGTACTTC AAATTGAAAA TTCTAAAGTC TGAGCNTTTA 
    TTACTATTTT ATGGAGATTT TGCTGTATCT TTGTCGTTTC TGGAGTGAGT 
    TTGTCGGGGA TGATATCAGT ATACGGGTAT AGTTTAGTAG TACATTTGTT 
    TGCTGAATCT GACTTTTTCA AAGATGAGAT CTAAAACAAA AGTGTTTGTT 
    TCAAATGGTT CAGAATAGAA ACAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26467903 [Map]; Strand: c
      • AT1G70280.1 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G70280.2 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-1037-1 - 3-prime edge 
    NTNAAAACGG TNGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCTCAACATC ATCACAATCT CTTCAAGAAT CAATAAACCA CAAAATTTGT 
    ACTTACATAA TGAAAGAGAA GATGAGATCT TGTAGATGTT ACTGTTCTCA 
    GAATCAAGAA TAAGTAACTC TCCGTTTGGT AAGACTTCAA TAGAATACNG 
    GTTCAATACC AAGTTTACTT CCATCAAACA CAGTCTCTAC ACTATACCCA 
    TTTTCGAATT TCACCATCGA TCTCGTTGCA ATAGCTGATT CATAAAAAAA 
    GAGAAACCTT TATTCGTTAG AAAAAGATTA AAAAGCAAAC TTTATGATCA 
    GAAAATGGAA GAGGATTCGA ACTTGTTTTG GTTGTGGTTT TGAGTGACCA 
    TAACCATTTC ATTAGTGAAG AGCCATGATT TGAGATAAAC CCATTAAGAA 
    TCTCTGCAAA AGGAGTAAGA TTTGAAAACA ATTAAACAAA GAATCGAAGA 
    GAAGAGAGAG TTAAAAAAAT GTGATTACGC TTACTTGCAG GAGAATTAGC 
    TGAAGGAGCT GAAGATACAA TCCCAGAGAG AAGTAGAATG AGAATACTTA 
    GAACTAGAAA ATCTCTACCC ATTGATTGGA TTTGAAGAAG AAGAGACAAG 
    TTTTAAACTT GAGAAGACGC GGCAGAGGAA GAAACTAAGA ACCCTAAGAA 
    GCT

AT1G70280.1

Model type
Protein coding
Short Description
NHL domain-containing protein
Computational Description
NHL domain-containing protein; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 7288 Blast hits to 4121 proteins in 430 species: Archae - 61; Bacteria - 1521; Metazoa - 1473; Fungi - 465; Plants - 266; Viruses - 2; Other Eukaryotes - 3500 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70280.2

Model type
Protein coding
Short Description
NHL domain-containing protein
Computational Description
NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 7202 Blast hits to 4120 proteins in 426 species: Archae - 63; Bacteria - 1459; Metazoa - 1476; Fungi - 468; Plants - 264; Viruses - 2; Other Eukaryotes - 3470 (source: NCBI BLink).
Link
InterPro Scan - TAIR