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52-1056-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7972853 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 52-1056-1 - 5-prime edge 
    GATAAACNAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCATTAT CACCGTTCTC TGTTTTTTTA ATACAAACCT 
    AATTAGTAAA AATCATATTT TCTTCATATA TACTTCTGTA GTAACATTAG 
    CTAGAGACTA TTACTACTTA CGATAATGCT AAGCGGCGCA GCAAAAACGC 
    AGACAGAGAA TCCGACACAG ATACCTCCAA TGATCTTCGC ACGTGTGGTT 
    CCTTTTGCCA AGAATTGGCA GAGGAGGAGA ATCAAACAGA ACCCTCCAAA 
    GTTCATTAGC AACAAGAGCT TCACCGTTAG CATCTGCACC AAAATAATCA 
    ATAAATATCA CACATACAAT AAACATCACA TATACATATA TTTATGTTGG 
    TAATGTTACA TACTCGGGCT TTCTTGGATG CGAAGGCAAC AAAGATGGAG 
    ATGTATATGG TTTCAATGAA GCAACCAAAG CTGTTGATGG TGACGAGAAG 
    GAAGACATCT TTCTTCTGAG TAGCGTAGTA GAGCCAAAGC ATCGCGCTGA 
    AGAGCGCCAC CACATAGGGA ATAGATTGAA ATCCTTCTGT GGTTTTCTTC 
    TTACAAATCC TATAGAACGT TGGCCTGCAT CGAATAATCA ATATCTATCT 
    CTTAGTTTAA TATCTCTCAT TTTGTTTTGT AATATTTTTT CGTCAATTAT 
    AATAGATCAA TTAAAAGGCT ATCAAAAGGA AAAAAATGAA ATCCACATCC 
    TGCCATCATA ACCTCATGCT GGAAAAAGAA ATGAAAAAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7972846 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 52-1056-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    AAGACGAAAA GTGTGGAGTA CATGCCGTTT AGCTTATCCT TGACTCTTAC 
    CATCAGTGCG GTCATATGGC TCCTTTATGG TCTTGCTCTT AAGGATATCT 
    ATGTTGCCGT AAGTCATCAT TATCATAATC ATTATCGTTA TTTGCATGAA 
    GTGGTTGCTT TTGTTTCTAT TTTACCTGAG CCTATGATGC TAATCATAGA 
    TAAAGAGAGA TATGAATT

AT5G23660.1

Model type
Protein coding
Short Description
homolog of Medicago truncatula MTN3
Curator Summary
homolog of the Medicago nodulin MTN3
Computational Description
homolog of Medicago truncatula MTN3 (MTN3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR