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52-1058-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7978550 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: -4625; Region: intergenic
      • AT5G23665.1 - [+] show detail - pre-tRNA
        Distance: -2848; Region: intergenic
    Flanking Genome Sequence: 52-1058-1 - 5-prime edge 
    AAGAGGCCCC TATATAAAAA GAGAAAGATA TAAAAGATAA ATTGAAGAGG 
    ATATGAAATG ATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7978469 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: -4544; Region: intergenic
      • AT5G23665.1 - [+] show detail - pre-tRNA
        Distance: -2929; Region: intergenic
    Flanking Genome Sequence: 52-1058-1 - 3-prime edge 
    AAAACGGANG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATATANAG 
    CCGACGTACT CGTTATCTTC ATGCATGTTT TATTTTACTT TTAACAAAAA 
    TTCGTATCTT TTGCATGGAA CACAATTCCA CGTCACGATT CACAATGGAC 
    ATGGTTGGCC ATGATTTGCC AAAAAGTTTG GAATATAAAG CATTCAATAT 
    TAACCCCATG ATGTCATATA TGTATACATA TATTGATTGA GATTAGTCTT 
    TTCTCTTTTG CATCTTTTTT TTTNNTNTTT GGCNTCTTNN ATTNGNTCAA 
    ANAATTTTTT TTTNNCAANA ATGGNAAAAG NNTAGTANNA AATTTNANTN 
    TAANCNATGG NNANCAGGTA AATGTTGNNG NNANCNTAAA NNGCGGTGGT 
    TTNAAAAACT GTAAAANTTT AAAAGGNNCT GGACTTTGGT TTTTNGANNC 
    CCCGAAAATN ANCCTNTTAA AGANNGCNTN TTATNGCCTT TGGCCAGGNA 
    NTTTTAAGGC NCTNTCTGGG GTTGNGGNCC CCCNAACAAA AAGCGGACCN 
    NAGNANCAAT GCNTNGCCCC CCCATAANAT NTNGCCCATT TNATTTNCGA 
    TGNCAANCNN ANACNNNNNC AGGGCTAAAT AACCANCANT GNNTTTNTTN 
    TAGGAAATTN NAAANCGTTC GGGGCGNTAC NAANTTGNGN ACANNNAATN 
    NNATGCCAGN TNCNNTNTNG NAAAANACCT TGNCCCGTCN NCNANANCCN 
    NTNNNNCCAN GNNCATAACC CNNTTTGCCT NNCNANGNCN TTNANNATCN 
    NAAATNNTNT CG

AT5G23660.1

Model type
Protein coding
Short Description
homolog of Medicago truncatula MTN3
Curator Summary
homolog of the Medicago nodulin MTN3
Computational Description
homolog of Medicago truncatula MTN3 (MTN3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23665.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gln (anticodon: TTG)
Link
InterPro Scan - TAIR