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52-1061-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13361409 [Map]; Strand: c
      • AT5G35100.1 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -20; Region: promoter
      • AT5G35100.2 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -19; Region: promoter
    Flanking Genome Sequence: 52-1061-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CAGACAATGA TATCATCATC ATCATCATCC 
    AACATGGCAT CATCATCAAT CCTCATCCCT CCGATTCTCA CCCGTCGTAA 
    TCTCCTCCTC TCCACCACAA TCGCCACCGT AACTCCACCA CCACCAGCTA 
    AACCACCTTC CCCCGACATC ACAATAACCG ATCGAGTCTT CCTCGACTTC 
    TCCCTCTGCC CCACCTACTT CCGCTCAGAT CCCTCCGCGA CACTCTCCTC 
    CACCACACCT TGCTCCGATT CAACTCCTCT CGGCCGCGTC GTTCTCGGAT 
    TATACGGCCG TCACGTTCCC ATAACCGTCT CAACTTTCAA ACGTATGTGT 
    ACTTCATCTT CCACATCTTA CAAAAACACA CCTGTCCACA AAATCTTCCC 
    TGGTCAGTAT TTTCTCGCCG GAAGACAAGG AGGAGGACGG CGAGATACGG 
    CGGAGGTTGG TTATTCACTC AGAGACTTAC CTCGTAACAC CGACGTTGTT 
    AATTCCAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13361406 [Map]; Strand: c
      • AT5G35100.1 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -17; Region: promoter
      • AT5G35100.2 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: -16; Region: promoter
    Flanking Genome Sequence: 52-1061-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGTCTCTAT CTCTATATCT TTTCTTCTTT TACTTGCTAT GTTCTACGAT 
    GTCGTTTTGG ACCTTAATAG GTTACTGGGT CGGGCTTGCA GTTTACTATT 
    TTTTTGTTGT CCTCTAAATT TTATTAAAAA CCAAAGTAGG ATACAAGTTA 
    AAATATATAA ATCGGTGGAT CAATGGATTG TCTCCAGAAA CTCAATCCAA 
    AAGAGGGAAG AAAAAACCCA ACAGATATGG GAAAACTAAT TTAAATCAAA 
    GAAATCAAAC CAAGAGACAA AATTCTAATG AAGGTCAAAA ACTATGAGAA 
    AAACAAGATT TAAGCACTAA AAATGAGCAA AAGGATCAGA AACTCTCACC 
    AAACTTTCCT AATGTGAACG TCGGAAGCAC CAATAAAATT GGATAGACCT 
    TACATCGAAG TCAAACCAGT AGCAAACCGA CAGAGAGAAA ATCAAGAGGA 
    TGCTAAAACC AGAGACACAA GTACAAACAC CATCACACCT CACCAATCGG 
    ACGGAGATGG CAAAATGCAA TAGGGACAAG GCTTTCAGTT TACTATCTTT 
    ATTTAATTCT TTTCATATTT GTTTTTTGAA AAGTATTGCG GTTTTTCTTT 
    TTTACTGTTT CTTTATTATG AAAGAAATAT CTTACAAAAC CACTGTTCTT 
    GAGACAAAAA CTCAAACTGG TTATTCAATC TGACATCAAA GACAACTGAA 
    ATAAAACTAC ATGTTATCTA CATGTTAT

AT5G35100.1

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, peptidyl-cysteine S-nitrosylation; LOCATED IN: thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G34960.1); Has 4654 Blast hits to 4654 proteins in 798 species: Archae - 9; Bacteria - 741; Metazoa - 1669; Fungi - 839; Plants - 784; Viruses - 0; Other Eukaryotes - 612 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35100.2

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, peptidyl-cysteine S-nitrosylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin 5 (TAIR:AT2G29960.2); Has 4084 Blast hits to 4084 proteins in 692 species: Archae - 13; Bacteria - 526; Metazoa - 1613; Fungi - 701; Plants - 735; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).
Link
InterPro Scan - TAIR