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52-1067-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16442648 [Map]; Strand: w
      • AT5G41080.1 - [+] show detail - PLC-like phosphodiesterases superfamily protein
        Distance: 0; Region: exon4 (CDS)
      • AT5G41080.2 - [+] show detail - PLC-like phosphodiesterases superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-1067-1 - 5-prime edge 
    ATGAGAGTAG AGTGACGGAT CTGAGTCTGT CTGAGTTTCT CCTTTATGGA 
    CCTCAGAAGG AAACTGAGAA AATAGGGAAG ACACTGATGA GGAAATCTAA 
    AGAAGGGAAG GTTTTGAAAT GGGACGTTGA TTTGGATGAT TCTCTTTGTA 
    CGTTGCAAGA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16442532 [Map]; Strand: w
      • AT5G41080.1 - [+] show detail - PLC-like phosphodiesterases superfamily protein
        Distance: 0; Region: intron3 (CDS)
      • AT5G41080.2 - [+] show detail - PLC-like phosphodiesterases superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-1067-1 - 3-prime edge 
    ACTCTCATTA ACAATACCCT GAACCATAAC ACACAAACAC CAGATCCATG 
    AAGACAAGAT CCAGAAATAT AAAACCAAGA TCTATGAAGA AAGCAATGTA 
    GACGTTACAT TTTCTTCAGA GTAGATGAAA TCATCATGGA AAATGACAGG 
    GCAATCATCT TTTGTCACCT ACAAAAGAAA AACCACACAA AGCT

AT5G41080.1

Model type
Protein coding
Short Description
PLC-like phosphodiesterases superfamily protein
Computational Description
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41080.2

Model type
Protein coding
Short Description
PLC-like phosphodiesterases superfamily protein
Computational Description
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: senescence-related gene 3 (TAIR:AT3G02040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR