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52-1072-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185878 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1364; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4665; Region: intergenic
    2. Chromosome: 5; Position: 11186380 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1866; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4163; Region: intergenic
    Flanking Genome Sequence: 52-1072-1 - 5-prime edge 
    CATACCAGCN CNGGNGCGNC GANNACGCGT GCCAATATAC GCAGTTAAGC 
    GTGCTTGGGC GAGAGCAGTA CTAGGATGGG TGACCTCCCG GGAAGTCCTC 
    GNGTTGCATC CCTCTTTTAT GTTTAACCTT TTTTTTTTGG GTAAAAANTT 
    TNNNANTCCN NAATTTTNAA ACNGGGGGGC NAAATTGGGA NNGGNAANCN 
    TTTTGGNAAN GCCNAAAAAA NGCCNTCCNC CAAAAAAANC NGGAAAAGGN 
    AANTTTCCNT TGNNTTTTTN GNNAACCNAA ANTGGGANCT TNAAAANCTT 
    TTNCGGGNNT TTTNNGNANT NGGGGTTTTT TAGGGNCCCA AAANNANTTN 
    NTAAANNNTT GGTTTNAAAN TTTTTTNNGG CTNAAAANNN NTTNAAANAN 
    AAGGGGGGGT TCCNAAAAAA GGGGGGGGAN CCNNGGGNAA GGGGNNNNNA 
    NNNNTTTNAA AAAAAAAATT TTAAAANGGG NTTGGNNNTT NNNANGGGGG 
    GGATNNNTNC NNNNNTNANG GNNNGGGNTN NNNNNNAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185262 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -748; Region: promoter
    Flanking Genome Sequence: 52-1072-1 - 3-prime edge 
    CTGGTATGAT CGCATCCGTT AGTATATGTA ATGCAATCGT ATATATTCTT 
    TTTTGAAGAC TTGATGAACC ATTCGCCGTG GGTCCCACCC GCTATGTAGG 
    GATACCCCAT CTAGTCTTAA TGAGCTTTGA TGCATGAAAA AATTCGAAAA 
    CAATGCNTTG AACAAGTAAT TTTGGGTCTG TAATATAGCC CAAATCACGA 
    AAATGCCCGA AAAAGTACTT AAAGGTCAAA ATTTGGGGTC GACAAAAAGT 
    CAATGGAAAA GTTCCATTGT CCTGCTTCTT TTGTCGGAGG GCTGTCTTTG 
    GGCTTTCCGA AAAGGTATCA CATGCCAAGT TTGGCCTCAC GGTCTAAAAG 
    TTATGGAGTC ATAAAGTTTT AACCAAAAAA AAAANGGTTA ANCNTNAAAN 
    AGGGNTNCAN CTCGNGGNCT TCCCGGNNGG NCNCCCNTCN TANTNNTGTT 
    TTCNCCNAAN CNCNNTNAAN NGGGGANTTN TNANGGNATN NCNACCCNGG 
    NCCGTGANCN CCNNNNNNCN TTNNAA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR