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52-1076-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22764815 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-1076-1 - 5-prime edge 
    ATTCAAATAA ATATTATTTT GGTCATTAAT AATTAAAAAG ACACATGAAT 
    TAGGGATTTT GATGTTATGA AATAGAATAA GTAAACATTA TACTATATTA 
    AAATAAAAGT AATCGAAAAG GGCAAAAGTT CTAATGATTT CATAATTACA 
    TAGGTCAAAA AACAAAAGAC TCTTTTGATA ATGGGTTTTC ACTTTTCAGA 
    ATTATTTGTG AAATATACCT CATTTGATTG ATTCAATATT TTAATTTGGT 
    AAGCAACCCC GTCCACACAA GTTACAACTA TGATCAAATT GTCGATTGAC 
    TCTTCACAAA AGTCAAACCA TTAATTAACA CTTGCTTGAC ATAGTGAACA 
    ACTAACATTT GAAAGCAAAA ATGGTGGGTT TGTTTATACA TTTGTGTGTG 
    TTTGTGCTTG AGAGAGAGAA AGAGAATTAC TTGAGACTTG TGAGCCCTTT 
    GTGAGTGTGG AGAGGCTAAA TGGTTTGATG AGGATGTTAA GAGGAGAGAA 
    TAAGAGTATT TATAAGCGGA TAAAGAGTGG AGAAACGAAG AAGAAGCAAG 
    ATTCAAACTT TTTGTCTGAG TGTTTGGTGA TCTTATAAGA TTAGCAATGA 
    TTTTATCATT TAGTGGTATC AATTGATTGG AAGATATAGC GGTAACATTG 
    TCTTCAGAAA AGGCTGAAGT GATAGCAAAT AGAGACATAT NCTTATTATA 
    CTAGCAAACA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10328903 [Map]; Strand: c
      • AT5G28360.1 - [+] show detail - ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyc...
        Distance: 0; Region: exon3 (NonCoding)
    Flanking Genome Sequence: 52-1076-1 - 3-prime edge 
    ATTTGAATAC TAGTAAAGTG TGTATATATA CGTACGCAGC ATAATAAGGA 
    GTAGGGACGA GAAAAGCGTC GCCGGGATCA GCAAGACAGA ACATGATCGT 
    CTCATTTGCT CCGGTGGCTC CTCCGCTCAT CACCACCCTC TCCGCCTCAA 
    ACCTCACCCG CCCGCCTCTC GCTCTCTCCA TAAACGTCGC AATCGCCTGT 
    TTATTTTCCG TCCCCAAACA AAACATTATT TGAAAGCAAA TTATAGTTCT 
    AGAAATATAC AAATCTCAAA TTCCTAAGAT TATAATATAC TCAATTCATA 
    ATCTTACATA AATGTAAGGT GTATAATTAC TACCAAACAA GAGTACGTGA 
    ATGAGCATAA AAATACTTGA TACTGTAACA TATATAAGTA TATAATAATT 
    TAATAGATAC TGTATAATAA TAATAAAACC TTATAAGAAA TGAGATAAAT 
    ACCTGTCTAA ATTGTTTGAG ACCGTGATAA TCTTGAAAAA CAGCAATGTC 
    GGAGAAAGAG TCAATTCCCT CCGCCGTACA AATAGATGCA TGTGGATTTT 
    CCTTTATCCA TTCTTTGATC AAATCTGAAC AAAGCTGAAA GCAAATCACA 
    ATAAAATAAA CTAAATTAAA AAACTTATTA GAAGAAGAAA AAGTATAACG 
    AACTCATTAG GATGTAACTA ATAAGAAGAC GAACTTGATT TTCGGCGAGA 
    CCCATTTGAA TAACTCCTTG TGGATT

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28360.1

Model type
Pseudogene
Short Description
ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups
Curator Summary
a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.
Computational Description
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE (ACS3); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: biosynthetic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 826 Blast hits to 826 proteins in 226 species: Archae - 2; Bacteria - 146; Metazoa - 60; Fungi - 54; Plants - 536; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR