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52-1095-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10063120 [Map]; Strand: c
      • AT2G23672.1 - [+] show detail - other RNA
        Distance: -125; Region: promoter
    Flanking Genome Sequence: 52-1095-1 - 5-prime edge 
    ATCAGAATTA TGTGGTCTAT TTTGCTTCGG TTTTGATTTT TATCGGAAAT 
    AAGTAAATTG TGTGGCTCTT ATAGCTTATG GCTTATAGCA TTTTCAAAGC 
    ACATTTCATT TTTAAGTTTA CCAAGCCTCA AGTTTAAAGT TGAATAATAT 
    TATTAACATC AAAACAATTT TTATTTTGCA TTTAAAGTCT TGATCATAAT 
    ATCTTAAAAT CACAAAACTT ATATAAAACT ATAAAACATA TATTATAATA 
    TATAATTATA ATCATAAGTT ACAAGTATCA ATGTATTAAA AAATAAATAG 
    TATCAATACT AAATAAGATT TTTTTAGTTT TTTAAAAGAT ATTTATCAAC 
    CATTCAAGTT AAATTCATGA CATAATATTC TTGTGTTATT ATCAACTAAA 
    TCTTGACTCT TAATATTGTA TCAAGTTTTG TAAATCAATA AAGTATTTAG 
    AGAATTTAAA GTAAATGTTC TTGATTTTAT TTCATCAAGT TTAAATCAAT 
    GAAAAGTAGT TAGGAACGTT GATTTATCTT CTTTATTCTT TCAATTTTAT 
    ACTTTTATAA TGCTATTATT GGAGGCAAAA AAAGAGAGGA AGAATAAGCT 
    ATTCTCTAGT ATCTATATGA ACTCTTCATG TAAATTACTA AAGAATATTA 
    GTTACAAGAA TGAAATATCT ATAACCCGTT CAGGTTAAAT TTCTATGTTC 
    AG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10063236 [Map]; Strand: c
      • AT2G23670.1 - [+] show detail - homolog of Synechocystis YCF37
        Distance: 0; Region: exon1 (3UTR)
      • AT2G23672.1 - [+] show detail - other RNA
        Distance: -9; Region: promoter
      • AT2G23673.1 - [+] show detail
        Distance: -969; Region: promoter
    Flanking Genome Sequence: 52-1095-1 - 3-prime edge 
    ATTCTGATCT TCTTCATCTC TAGGTATATG GTTTATGATA TTACAAAACA 
    TAATTAACAG CAAAAATTTA GACAAATATT TCTTTAACTC CAACACAAAA 
    GTACACATAG CATTAGGTTA TTCCTAAGAT TTCTGGGCTT CTGGTCCTAA 
    AATCCCATTC ACTACTGACG TAGCGACAAG AACTCCGACG AACTCAGCCG 
    CCACGACGGC TCCAGCTTGT GTCAATCCAT TAAAACTAAC CGCCGTCACG 
    ATTTCCTTCT CCGCCGTCTC TACACCTCTC TCCGCCGCTT CTAATCCTTT 
    CTCCGCCGCA TCAACGCCTT TCTCCGCCGT CTCAAAGCCT TCTTTCACGA 
    TCTCCACCGC TTCTTCTTCT GCTTTCTTCA GTTTCTTTCT TATACCAAAT 
    AACGGAATAT TCTCAGCCAT TGATGCAGAC TGAAGTCCCG TCACTACCGT 
    CGCTGCCGTC AACGAAAATA ACAGATTCCT GCGAGAGGCG CCGGTCAGCG 
    AGAACGAAGC AAGCGCGGGT TTGTTAGAAT GCGCCGCTCG TGGGCTAACA 
    TGCGCGGTTC TTGCGCAACG CGCCTGAAGA GCTCCACTGC CGCCGCTGAG 
    TAAAGAAAGC GAAACAGTCG AAGCCATTTT TTAGATGATC TCACAAGAAA 
    CGAAAAAAGC TCTCAGATGT GAAATAGAAA ATACGAAAAG TTTTGATAAT 
    ATATAAGATA ACAAAATAT

AT2G23670.1

Model type
Protein coding
Short Description
homolog of Synechocystis YCF37
Computational Description
homolog of Synechocystis YCF37 (YCF37); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G23672.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT2G23670
Link
InterPro Scan - TAIR

AT2G23673.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT2G23680; stress-responsive protein, putative
Link
InterPro Scan - TAIR