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52-1105-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8093430 [Map]; Strand: w
      • AT5G23960.1 - [+] show detail - terpene synthase 21
        Distance: 0; Region: intron2 (CDS)
      • AT5G23960.2 - [+] show detail - terpene synthase 21
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-1105-1 - 5-prime edge 
    GCGATTTGTA CACGGTTGGA ATAATTTTCC AAGTTTTCAG GCAATTCGGC 
    TTTAAACTTT CTGCCGGTAA AAATACTTAT AATATATGAA TTATGAACAA 
    CACTACACAT TTTGCATGGT TTTTTATTTA ATCCAAAATT TTTATTTTTA 
    CGTCTCAAGA TGTGTTTGAG AAGTTCAAGG ACGAAAATGG GAAGTTCAAA 
    GGACACNTTG GTGACAGATG CATACGGGAT GTTAAGTTTG TATGAAGCTG 
    CACAATGGGG CACTCACGGA GAAGACATTA TTGACGAAGC TCTCGCTTTC 
    TCACGTTCTC ATTTAGAAGA AATTTCGTCT CGGTCTAGCC CTCATCTCGC 
    AATTCGCATC AAGAATGCTC TAAAACATCC ATACCATAAA GGCATCTCTA 
    GGATAGAAAC AAGACAATAT ATCTCATACT ACGAGGAGGA AGAGTCGTGC 
    GACCCAACAT TACTTGAGTT CGCAAAGATA GATTTTAATT TGCTGCAAAT 
    ATTACACCGC GAAGAGCTTG CTTGCGTCAC AAGGTAACAA ATAATATCAT 
    GGCCACTCAA CATATATAAA CATATTGTCT TGCATGAATT GTTGAAATTC 
    TTTTCATTAC ATTCCAGGTG GCACCATGAA ATGGAGTTTA AATCTAAAGT 
    AACATACACA AGGCATAGGA TAACAGAGGC ATACTTGTGG TCACTTGGAA 
    CATATTTCGA GCCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8093364 [Map]; Strand: w
      • AT5G23960.1 - [+] show detail - terpene synthase 21
        Distance: 0; Region: exon2 (CDS)
      • AT5G23960.2 - [+] show detail - terpene synthase 21
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-1105-1 - 3-prime edge 
    GAAAACGGNN GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCGTG 
    CAAATCGCAT CCCTCTTGTC TTACCATCTG AGGAAAATCA AGACAATCAA 
    ATGACTTATC CAATTGTTCT ACGATATCTT TCTCAAAGTG ATAGGAGACA 
    CCAAGGCGAC ATAGAGCATC GATGAATTTG ATGTTCTCTA TCGGATTCGC 
    TTTGGAAGAC ATAAAAGCT

AT5G23960.1

Model type
Protein coding
Short Description
terpene synthase 21
Curator Summary
Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.
Computational Description
terpene synthase 21 (TPS21); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23960.2

Model type
Protein coding
Short Description
terpene synthase 21
Curator Summary
Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.
Computational Description
terpene synthase 21 (TPS21); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1).
Link
InterPro Scan - TAIR