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52-1115-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23356878 [Map]; Strand: w
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -1718; Region: intergenic
      • AT3G63220.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 514; Region: intergenic
    Flanking Genome Sequence: 52-1115-1 - 5-prime edge 
    CACCTGACGT AGAGGTTATA AAATAGAATT GGAGTGGAAT CAGCACTAAT 
    CATTCATTTG ATTCGATACT GAAATTTTTA TATTTCTTTC CATTTCATGA 
    TTTCTTTGAT GACTCGCCAT CTTTAATCAT GGTTATTATT AATTCGAAAG 
    TGGCACCGAT ATATTGTGTT TATCAAGGAT ATAGTCATAT CACCCTAATT 
    ACCAAAGATA AAGAAAGCAA ATGAGCAAGA TAATGAGAGG TCCATTTTCT 
    TAAATCATTG CTTCTTTGTC AACATGTCTT AAATCCGAAT CATTACTCTT 
    ATACACTACA AAATACTCCT TAGAGCTTGA ATACCACAAT TTTGTTTTTC 
    TGTTCAATGA CCAAATATCT CCATGTTCAA ACCCATATTG CTCTTTCAGA 
    TTGTTTAAGG CCCAACACAA AATAACTTAT GCAACCTGTC CAAACCCAAC 
    CTGATATCAT TCCCACATAT AGCCCAATCA ATAGACCTAT TTTTTTTTTT 
    TTTTTNCNNN NNCCNAAAAA ANNNTTTTTT NAAAAANAAA AATTNGTTTT 
    TNNTTTAAAA AAAAAAACCC GGGTTTGGNA AATTTTTTNA AAAAAAAANN 
    GGGNTTNNNN TNTTTTTNNT TNCCNAAAAA AAATTTAAAA ANAATNTTGC 
    NCCCCCCGNN TNNNNNCNGG GGANAAANNN CCNNNNAAAA AAAACCGGGG 
    GNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23356762 [Map]; Strand: w
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -1602; Region: intergenic
      • AT3G63220.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 630; Region: intergenic
    Flanking Genome Sequence: 52-1115-1 - 3-prime edge 
    GTCAGGTGGT TTAGAAGGAA ATCAATCTAT CAAGAGTCAC GTCTATGGAT 
    TGGGAGTCAA AACATATACG TATGCTTCTG GTAGTAGTCG TAGTGATTAA 
    GGGATCAAAG TTGTTAGACT GAATGGGTTA CAAACACAAT TACNGGAATC 
    GATGGACACA CTCATTACAT TAAAAAGAAA TAGCACATTC AATGGCATAT 
    ATGGATGAGT AGTCGCTATT TGTTTCTTCT TATTTGTAAG AAAATTAATC 
    AGATGGATAT TCACAAAATT AGATTTATCC GAAAGAAAAA GAAAAAAAAA 
    NGANAAACCC ATTNGNGGCA AAAAAANACC TTGNGGCTTG AAACCAANAC 
    CCAANTCCCC AAANTTTCCT NGGNTAACCA AACCNTANAA ANTAAAANCT 
    N

AT3G63210.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Curator Summary
encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT3G22550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63220.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G16250.1); Has 6493 Blast hits to 4467 proteins in 250 species: Archae - 4; Bacteria - 460; Metazoa - 4606; Fungi - 8; Plants - 1152; Viruses - 24; Other Eukaryotes - 239 (source: NCBI BLink).
Link
InterPro Scan - TAIR