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52-1122-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23458290 [Map]; Strand: c
      • AT3G63530.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G63530.2 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-1122-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TCCTCCTTCC ACTAATCTCA AGTAAGTCTC TTTCTTCTCT
    CACTGTTTTC AATTTCAGTC CTTTTTTCTT TCTTTCTTCT TGATTTGTTT
    TGCGGTGCAG AAGATATATC CTTCGAGACT CTCCCTTGCC GTCTCCAATT
    GCCACTCACC GCTCCAACTC TCTTCGAATG TATGTATGCC TCTCCTTCCC
    TGCGCTTTCA ATTCTTTGTA TGCTTAGTCT GTCTCTTTGT TCATTCACAT
    CTGACCCTAA TCCACTTTCT TGCATATATA CCTACTACTG CTTTCGGGAC
    TTGTCTTGTT TATGCAAATC TAGAAATAGT TTTGTTCCTT TCTTTTCCCC
    TGGATAAATT TTCTAGTTGC TAGGTTCATT CGTATTTTGG AAGGTATTTC
    ATCTCTCCGA CATTGCTCTC AACACTGTCC CCTCCAATGC CTAGTCCTTT
    TATTTTTTTC TTAGTTCCAA TTCCCTTAAA TACATCTCAC AGTCTTCTTC
    TTCTTCTCGA TTGCAGTAGC TGAAATGAAT GGAGATAATA GACCAGTGGA
    AGATGCTCAT TACACGGAGA CAGGTTTCCC TTATGCTGCT ACTGGAAGTT
    ACATGGACTT TTATGGTGGT GCGGCTCANG GGCCTCTTAA CTACGATCAT
    GCCGCAACTA TGCATCCTCA NGTACCTTAT GTACTTAAGT AAATTAAAGG
    GCCCATCCGT TGNCAAATGA GCTTATCATT GGGTATGCTC AT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23420616 [Map]; Strand: c
      • AT3G63430.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-1122-1 - 3-prime edge
    CCTAGAGGGA TGCAATAGAA TTGACTTACC AACAAAACGA CAATGTCTGT 
    GTTTCTCCAG AGCGCTGAAT CTGAATCTGC CTCGGGTAGG ACGAATCAGC
    AGAGTGTGTA CTCTACCCCT GAGCTACGCT CTCCTGCGCC GGCTCAACAA
    GGATCTTCTT CTTCTTCTTC CTCTAGGCCT TGGAGGTTCT CTAAAGAAGC
    TCCGAGGCTC TCCCTCGATA GCAGAGCCGT CGTGGATGCC AAGGGCTGCC
    TCAAACACAG ACAGATCCGA GCCGATGCGG TTGAGGCTGA GAACCAGCGC
    GGCTCACCCA GTGTGATCNC ACGGCTCATG GGATTGGAGC CATTTCCCCN
    CNNNCTNTNC ANANATCACC GNNCNNNNCC GNNNNNNANN CGNGGGGNNA
    GNNANNNNNN NNG

AT3G63430.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63530.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.
Computational Description
BIG BROTHER (BB); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 8059 Blast hits to 8045 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 2322; Fungi - 418; Plants - 4266; Viruses - 8; Other Eukaryotes - 1045 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63530.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.
Computational Description
BIG BROTHER (BB); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR