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Mutant Lines
52-1125-1

52-1125-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 7982103 [Map]; Strand: w
  - AT5G23670.1 - [+] show detail - long chain base2
    Distance: 0; Region: intron1 (CDS)
  - AT5G23670.2 - [+] show detail - long chain base2
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: 52-1125-1 - 5-prime edge
```
AGTATATAAT GTACGTAGAT GTGGATCAAT GTACAAGTTT GTTTAACTTT 
ATGCTTCTTA TTCCGGTGAA ATTGGCTATC GACAGGGATA CGCGCCGATC 
TGTTTGGGGC ATGAGGATTT CTATATCAGG CGATTGTATC ATCGGATTCA 
GGTAAATTCA TTATCAAATC TATGATTCTG TTAACAAAAT CGAATTGATT 
ATTGGCATTG TAGTTATGCA AGCT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 7981987 [Map]; Strand: w
- AT5G23670.1 - [+] show detail - long chain base2
  Distance: 0; Region: exon1 (CDS)
- AT5G23670.2 - [+] show detail - long chain base2
  Distance: 0; Region: exon1 (CDS)

TATATACTGG AGAAAACAGA CAGACCTGGA GATTGCTAGT GAGCCACCAA 
TCAATGAAGC GACGGAAGAA ATCTCGGAGC TGACCAAAAG CAAAGAGCAA 
TCCATAGCTG AAGTAGGTGG ATACAGCGGT TAAATAAGGA ATCGTTATCA 
TTTTCTCCAA GAACGGCTTC GTCTTCTTCT CCGGTCAATC AACTTGCCTC 
TTCCTCTCCT CTCTCGCCGT CGCTAGGCCG AATCGGAAAA CGAATTTGCC 
TTAGGCGATC TGGAGAATAT TTCCGACTCT CTCAGAAATT GAAAGTTGAG 
AGACAGAGAC AGAGACAGAG ACAGAGATTT GAATTGGAGG AATCTTTTCC 
CCTCCGTGAG ATTGAGAAGG GATCGGATCA TAAAACCATT TCTTTTCTTT 
TTTAATATTA AAATATTTAA TAGTACAGAT AATTTATCTT TAGAACCTTA 
AAACGA

AT5G23670.1

Model type: Protein coding
Short Description: long chain base2
Curator Summary: Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description: long chain base2 (LCB2); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: photomorphogenesis, sphingosine biosynthetic process, sphingolipid biosynthetic process, pollen development; LOCATED IN: endoplasmic reticulum, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G23670.2

Model type: Protein coding
Short Description: long chain base2
Curator Summary: Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description: long chain base2 (LCB2); CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 10446 Blast hits to 10416 proteins in 2172 species: Archae - 77; Bacteria - 7037; Metazoa - 738; Fungi - 589; Plants - 234; Viruses - 9; Other Eukaryotes - 1762 (source: NCBI BLink).
Link: InterPro Scan - TAIR