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52-1127-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5750 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon15 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon14 (CDS)
    Flanking Genome Sequence: 52-1127-1 - 5-prime edge 
    GTGAAAGATC TCAACTGCTC TGGGCTCATT TCTGCCATAA GAAATTCAGG 
    TTCAGCAGCC GTCTCTAACA GCTTAAAGAT CTTGGCTCCT TCTTCGCTGT 
    CAGTGTCGTT CTGGCTGTGA ACACCATTAA TTCCTCTCTG GTACTCACAC 
    ATAATACCCT CAACAAGAGC TGAGCGCCTA CGGAAAATAG AAAGAAAAAA 
    AAAGGCAAGT ATGAATGANA ATAAACCATG ACGAACTGCA ATCTTTGGCT 
    CTTTTGTTGG GAAAACCATC CATAATCAGA AGGCCAGAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5634 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron15 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron14 (CDS)
    Flanking Genome Sequence: 52-1127-1 - 3-prime edge 
    TCTTTCACTA CATATAAAGC AAAATTTGAG GTAGAATAGT AATTTCCTTT 
    TCTTGATATA TTGATTACAG TAATTAACTG CTTCAATCTG AACCTCAGGC 
    AGCCCAGCAA ATGCGGAAGG AAAAATCAGT GGCAGAAACT CTGGAAGACG 
    CNTGGTTTAG GTGAAAGGAA CGTCACCCCG TTCATGAGGA TTAGGCTTGT 
    TGGCCTGACG AGCTTAAGTT ATGAAGGAGA GCACAATCCA AAAGAAGGCA 
    TTGTAACAAT CTGGGATC

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR