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52-1129-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9851742 [Map]; Strand: c
      • AT5G27807.1 - [+] show detail - MIR164/MIR164C; miRNA
        Distance: -922; Region: promoter
    Flanking Genome Sequence: 52-1129-1 - 5-prime edge
    CTTTTACNNN CTNACAAAAT CGGTTATNCG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC TCTGTNCACC NACGTTGNCG CNNNTTTNNA
    CAGGATTAAG GAANATNNAT CTATNAGGTG ATGNCTTTGT GATGAACCGG
    TGCGTANTAT ANGTGANCAA ACATNNCAGA CAGNAGNAAC TNATGGGACC
    ATCGANNCTC AANNNNAACA AANGGANTGG ACNATNNCCT GNTCNACTNT
    NCCCANTTAA NNNNACACNA NTNTGCATTC NCAANNCGGA ATTACNNGCC
    NGGGNNGTAC GANNGCGNGG GNNNTATNCA TGATCAAAAA TACGATCCGA
    TTCATAAAGC AAGTTATTCA AAGTTTTCAT CTTCATATCC GGATTTTTAT
    TTTTATTTTA AAATCCGCTT TTACATATGA ATTGTTGAAA TATATGCATA
    ATACTTATAT AAATAAAATA TATATGGGGN GGTTTAATAT NNAAAATTTC
    CCCTTAACCC GGGAAAATNC TAAANTTTTC CGNTNTAAAA NGGGTTTTNN
    ANTTNCTCCC CCCCNTTNNA ANNNAAANNC CCCNTTTTTC NGGGGANANA
    ATATCCCCCN CAAAANNCCC CCCCCNTTTT TGGGGGGGGN CCCCNANCCC
    CCCCNAAGGT NTTTTTTGTN GTGNNANANN NTTTAAAAAA ANCGNGNCCC
    CNGNGNTTTT TTTTNTCNCC CCCCAAAAAA AAANCCCCNT TTTTTTTTTT
    TNAGGGGGGG GAAAAAAAAA AAAAAANGGG NGNTNAAAAA AAAAAAAAAA
    AAAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9851737 [Map]; Strand: c
      • AT5G27807.1 - [+] show detail - MIR164/MIR164C; miRNA
        Distance: -927; Region: promoter
    Flanking Genome Sequence: 52-1129-1 - 3-prime edge
    CTTTNAAAGG GACNAGGTAT TTTACNGACC GTTACCGACC GTTTTCATCC 
    CTNGTCGCTA AGNNGCGNGA GACGTNCCNT GTAGCNCATN CCNTCTTCCC
    NTGGTGACAC TCACAGNTGC TGTAAANAGT NGGGATAAAA TAGTGNGACT
    TGAACTTGGA TTCGGCTGGC NGGAAGTAGA CATAAACTGA CCCAAACTCA
    TNANCTATCT NTACTGTCTG TCNNTATTAC ATACATTGCG NAGNNAACTG
    GTNCATTATT TATATGGAAT GTTNGATNAA AATATTATAN CTACTCTAAC
    AAGCGTACCC AATTGTACAT TAATAATCTG ATCCTTCTGT CATGTTCAAA
    GGTCANTTTN GTNCNCTTTA TGCATAAACA ATGNACTAAT CATCCNCCAN
    CNAAAANTTA ATAGGGATAT TCTNANTNTN TNTATAACCC NANTNCGTCN
    TNAGGGNGGG CCNNTCTGAG TAGNGATTTC ACNGATNACG TAAACTGCNN
    GGAATTATGA NTAACNCNAG CNGACCTGTT TACTAATANN CNATCCNANC
    ATNTNTTTGT GCGNTAGCCC NCANTCNNAT NGGGGGAGGG AANANTTNGN
    NAAANCATGA GCCATACNAC TTCTTATCAT CANNGGAAAG AAGAANAACT
    TTTTNGAATA CGGNGTGAAN ANGAGGGNCT TCCCATAAAA ACNTCAANNT
    AATGACNTTT TGTTTTNNAA CCNNCCNCGG NNNTAAATTT CTGGNAACCC
    TTGCCTGNGT AATATGTAAC AANTTCAAAA NCCACGCCNG NGGGGNGTTC
    CGCCNANTTA NTAN

AT5G27807.1

Model type
miRNA
Short Description
MIR164/MIR164C; miRNA
Curator Summary
Encodes a microRNA that targets several genes containing NAC domains including NAC1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCG. Early extra petal mutant (eep1)
Link
InterPro Scan - TAIR