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52-1170-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3252364 [Map]; Strand: c
      • AT5G10336.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -299; Region: promoter
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: -758; Region: promoter
    Flanking Genome Sequence: 52-1170-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC ACATCTATGG ATTTTCCAGC GAGTCAGGTG 
    TCCCTAGAAG CTGACCTCAC TTCCATCGGA GCTGTCTATC GAATGTTATC 
    CCTGCTTCTA TCCAGAAGAT GCGATCTTTA GAACTACGAA TCCGTCTGAA 
    TAATCCAGCT CACCACGGGG CCGATTTCCC GACAAATCAC AGGGAATCTC 
    GTAAGGGTTA ATACATCTAC GGATCGCCCA GAGAGTCGTC TTTTCGGAGA 
    AGTTGACCTC GCCTTAATCG AAGATATATG CTGAGATATA AACGTTTACC 
    TCAAGCAAGT GCAACCAGTC ATGAGACCCA ACTCTATAAA ACCAGTCAGC 
    TTCGGGATCG TTTTCCTTGA AAATCCTGAT GAACTAGGCA GTGATATACC 
    TATCTACAGG TCGGCTTCTT TGCACTTGAC ACAATTTCCC TGACAAATCC 
    GCAGCTGTCG GAACAGCCAA CTTACGAATC AAACTCCAAG CGACCTGGAA 
    AGAAACAAGA TACAATCTAC GCGACAACGG AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3252425 [Map]; Strand: c
      • AT5G10336.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -360; Region: promoter
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: -697; Region: promoter
    Flanking Genome Sequence: 52-1170-1 - 3-prime edge 
    CTTTCGAGAA TCGTTGAGAC TTGTGGGGGA ATTGATCCCT AAGATGACTA 
    GTCTTCTTAA GAAAGGATTC TATGTCAAAC GAGATTGCAT CTGCAGAAAC 
    ATGGAGATAA TTCTCGGATG AGATATCGGA TCGAAGGGTA GTTAGATTCC 
    CTGGAAAGCT AACAACCGGG GCAATCCGTG AACATATTAA ACAAATGGGG 
    AAGTCAATAA ATTTATTTTA CATTATAACT GGTTTAAGGC ATTTAGCTAT 
    TATATTATAT TTATGGAGTG GAGGTAAGAA GACAACATTT TTCTAAGTAT 
    TCTAGTTTGT TTTTTTTATT TATGAAAGCA GTAAGTGCTT AACCTGCACT 
    ATGCATGAGC AAAAGTCTAA AAATGATATA AAAATATTTT GTAATAGATT 
    TGAGATGTTT TGTTTCTCAC TTTGAATGAA AAAAAAAAAN NTTTNNNTAA 
    AAAANTNGTN GCNGGTTTNT NTTTAAAAAN TTAANGTNGA AAATGGACCC 
    AAAATAANCC TCCNTTTNGG NTTTTNGGAC CCACCCNTGG CCTTCCCTTN 
    ATNTTTTNNA ANANNCNGNT NGTTTTGNAT TGGAGTCCCN CCCNATTTAG 
    GGAAGTTNNA GTTTTAANGG GCTTCTTNAA CANNTTNACA TNTGGNCTTA 
    GGCTCNATTC CNCCCCCCTA GGTGGGATGG GCGNCCTNCT TTGAAANNCT 
    TGGATCACNA CCCCGGNCCG NCN

AT5G10336.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10340.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR