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52-1172-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7942912 [Map]; Strand: c
      • AT5G23570.1 - [+] show detail - XS domain-containing protein / XS zinc finger domain-containing protein-related
        Distance: -212; Region: promoter
    Flanking Genome Sequence: 52-1172-1 - 5-prime edge 
    GTTCCCACTA TTAATTTATT GCTACGAACA TGACTTGCTT AATTTTTGTT 
    TGTTTGTCAA CGTAAACATG TCTTGCTATT TTTGTATTTA ATATAACTTT 
    CACCTTATTA AAAATGCACA AAAAGTAGAT ATATAATTTT TACTTATATT 
    TTGTTAGGTT TACATTTTTT GAAAATGTTT ACAATGGAAC CATACTGAAA 
    TTATTGTATT AAGGTTATAT ATAACTTATA AAACTCAAAA TAATCATAAT 
    ATTATGTACT ATAAAAGTTA CATACTATGT AATTGACAAA ATTTTATATA 
    ATAGAGAAAT ATAATTAAAT TCTTTTCTTG TATTATATAT GTATATAGAA 
    AAAATAATAT GTTATATATC ATTTAAGCGA AAAAAATTAT TGTTTTAAAG 
    ATATGATTGA AATGTTTATA TAGAAAACAA TCACAAGATT ATTTACTAAA 
    AGCAAATCAC AAAATAATTG ACCAACCTAT ATAGAATAAA CGAAACAAAA 
    TGTGTTACGT ATCATTTGTG TGATTGGCAG TTACGTTTTA TATTTTTGAT 
    TAAAACATTT TTAGAAAACA AACCACGAGA TTATTTACTA AAAAAATAAA 
    TCACAAGTAA TTGACCAACT TAAATATAGG AAACAAGACA AAAAAATACT 
    ATGTTACAAA TTATTTGTGT GAGGAGTNGN TATCTATATA CACATTTTAG 
    TAGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7943028 [Map]; Strand: c
      • AT5G23570.1 - [+] show detail - XS domain-containing protein / XS zinc finger domain-containing protein-related
        Distance: -96; Region: promoter
    Flanking Genome Sequence: 52-1172-1 - 3-prime edge 
    GTGGGAACAA TTAAGTTAAG CGAAAAAGGA AAAAAAAAGG TNCAAAAATG 
    AAAACAAAAT CAAATTGAAT GAAAATTTGG AGTCCAGAAT CGGGAAAACG 
    ATGCCGTTTT AGAGCTTAAT AAGCTN

AT5G23570.1

Model type
Protein coding
Short Description
XS domain-containing protein / XS zinc finger domain-containing protein-related
Curator Summary
Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.
Computational Description
SUPPRESSOR OF GENE SILENCING 3 (SGS3); CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR