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52-1175-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9481757 [Map]; Strand: w
      • AT4G16855.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -613; Region: promoter
    Flanking Genome Sequence: 52-1175-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCCATACA CGTAGAGAGA TATGTGTGTT TCAAAAGACA 
    AGACTGTTAT ATTTACATCC TTTTAGGAAA GCGAATTTTT CAAAGAAGCA 
    AAACAGAGAG AAGTAAGAAC AGAGTGCTTC TGCTGTTCTG GACATGGAGC 
    CATAAAAGGT TTCTAGTTCT CAGTAAGTGC TCCATCATCT GCAGGAGAAA 
    ATGGCTTGTG TGAAAAACTA AGAAATCGTC TTGTTTGGTC GATCCCACGT 
    TCATTACAAA ACAGAGTTGT AATACGTTTC AGGTTGCCTT AACAATGTGA 
    TAAGCTGTGG ACACGGCTAA GGATCCAGGA AAGGAATGTT AACAATGTGA 
    TGGTGTGAAT TCAGTCAAGG CAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9498707 [Map]; Strand: w
      • AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -1394; Region: intergenic
      • AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 1799; Region: intergenic
    Flanking Genome Sequence: 52-1175-1 - 3-prime edge 
    ATGTTACCAA AGGTTATTTT TCTCTCTTTA AATCAATGAA TAAATTTGGT 
    AAAGAAAAAT GTATTTCACA ATTTCACAAG AGAATTATCA ACAACAAAAA 
    AGTGTTGGAA CTAAATTTTT AAATAGCAAC CTCATCAGCA ACAATTGCAT 
    CACTGCTACC GTGGCGTTTC CTACACTCAC AGTAAAAAAC AGTGATTACA 
    ACATAACTCA GCACCACCAC AGCCCCATAC ATACAAAACC AGCTTCCACC 
    CGTCCCACTC ACCGACCTCT ATCACGACCC TGAGCTCAAG TGAGCTAGTC 
    ATTGTCACAT TTAGGATGTG AAAGCTAATT TCTCTGGTGA TTCTTTTAGC 
    TGAATTGGTT TGTGCAGGTT TGCTTCAGAT ATTGCACCAA TGACCTAATA 
    ATAATAATAA AAACATAATA CACCATCAGT CGATTCCACT CTTTTTTCTT 
    TCTTGCCGTC TTACAACGAC CTTGTGATCC CTAGGAACAT GAAGGACATT 
    GAGTAACTAC GAGGCAGTGA AGACTTATGG GAAGTAGCCA AGCTGCACAA 
    CCGTGAAACC TCTTTGCCTG AGGTAAAATC TCATCTTACC TCTCTTATAA 
    ACTCTCCATT CATTTGATTG CTGAATTTGT GTGACATAAT ACAAATGCTC 
    TGTTCTTCTT TCATCTTTGC CGCCAGCATA TGGATTCAAA TATCACATAA 
    AATGGTTTTC ATTGTTAGTC AGAACATGAT A

AT4G16855.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16880.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16890.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary
Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description
SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link
InterPro Scan - TAIR