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Mutant Lines
52-1185-1

52-1185-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 21115535 [Map]; Strand: c
- AT3G57050.1 - [+] show detail - cystathionine beta-lyase
  Distance: -873; Region: promoter
- AT3G57050.2 - [+] show detail - cystathionine beta-lyase
  Distance: -892; Region: promoter
- AT3G57050.3 - [+] show detail - cystathionine beta-lyase
  Distance: -899; Region: promoter
- AT3G57060.1 - [+] show detail - binding
  Distance: 0; Region: exon15 (CDS)
- AT3G57060.2 - [+] show detail - binding
  Distance: 0; Region: exon15 (CDS)

GNGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCA TTCCTCGTTA TTTAAACCAA AAGACTAGTG 
GCGATAATTT GATTGAAACT GAGCCCGAGG AAGAGCAATC TGACTCGGAG 
CCAGATTCTG CACAATGTGG TACGACCAAT CCTCGTTCCT TAAACCGAAA 
GACTAGTGGC GATAATTTGA TTGAAACTGA GTCCGAGGAA GAGCAATCTG 
ACTCAGAGGA AGAGCCATCT GACTCGGAGG AAGAGCCAGA TTCTGCACAA 
TGTGGTACGA CCAATCCTCG TTCCTTAAAC CAAAAGACTA GTGGCGGTAT 
ATGAAAACTT CAATATGTAT TTCAAAAATC TCACACAACT TAAGCTACAT 
TTTAGAAATT GTTATATACC GTTAAGTAAA GTTGTGAGGT TTTCAGGGGA 
AGAAGGCGAA TCANAAAGCA AGAGTACAGA GTCATCGAGC AGCATCAGGA 
GAAACCTGAG GTCAGGAAGT AGAAGTTAAA GAACCATTGT GTAGATGCAG 
AGAGAGAGCG AATGTCTGTT CAAGTTGCTC AACATCTCGA GAGCTATCTT 
ATAATTTACG TCTGTTTTGG TCACCGCTTT TGTTTCTCCC TATTATGCTT 
AGATATTGAA GAATCGACNA TATTTATGTC TAATGTCCTA NCCGGNTTAN 
TTATGACAAT TTGTAGCCCN AAATATNTNA NATN

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 21115541 [Map]; Strand: c
  - AT3G57050.1 - [+] show detail - cystathionine beta-lyase
    Distance: -879; Region: promoter
  - AT3G57050.2 - [+] show detail - cystathionine beta-lyase
    Distance: -898; Region: promoter
  - AT3G57050.3 - [+] show detail - cystathionine beta-lyase
    Distance: -905; Region: promoter
  - AT3G57060.1 - [+] show detail - binding
    Distance: 0; Region: exon15 (CDS)
  - AT3G57060.2 - [+] show detail - binding
    Distance: 0; Region: exon15 (CDS)
Flanking Genome Sequence: 52-1185-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
GCCGTACCAC ATTGTGCAGA ATCTGGCTCT TCCTCCGAGT CAGATGGCTC 
TTCCTCTGAC TCAGTTTCAA CTAAATTATC GCCTGATTCT TCCATTGATG 
GATC
```

AT3G57050.1

Model type: Protein coding
Short Description: cystathionine beta-lyase
Curator Summary: Encodes second enzyme in the methionine biosynthetic pathway
Computational Description: cystathionine beta-lyase (CBL); FUNCTIONS IN: cystathionine beta-lyase activity; INVOLVED IN: L-methionine biosynthetic process from L-homoserine via cystathionine; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cystathionine beta-lyase, eukaryotic (InterPro:IPR006238), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT3G01120.1); Has 21174 Blast hits to 21168 proteins in 2454 species: Archae - 221; Bacteria - 12373; Metazoa - 223; Fungi - 823; Plants - 274; Viruses - 1; Other Eukaryotes - 7259 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G57050.2

Model type: Protein coding
Short Description: cystathionine beta-lyase
Curator Summary: Encodes second enzyme in the methionine biosynthetic pathway
Computational Description: cystathionine beta-lyase (CBL); FUNCTIONS IN: cystathionine beta-lyase activity; INVOLVED IN: L-methionine biosynthetic process from L-homoserine via cystathionine; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Cystathionine beta-lyase, eukaryotic (InterPro:IPR006238), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT3G01120.1); Has 21173 Blast hits to 21167 proteins in 2454 species: Archae - 221; Bacteria - 12375; Metazoa - 223; Fungi - 823; Plants - 274; Viruses - 1; Other Eukaryotes - 7256 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G57050.3

Model type: Protein coding
Short Description: cystathionine beta-lyase
Curator Summary: Encodes second enzyme in the methionine biosynthetic pathway
Computational Description: cystathionine beta-lyase (CBL); FUNCTIONS IN: cystathionine beta-lyase activity; INVOLVED IN: L-methionine biosynthetic process from L-homoserine via cystathionine; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Cystathionine beta-lyase, eukaryotic (InterPro:IPR006238), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT3G01120.1); Has 20092 Blast hits to 20089 proteins in 2449 species: Archae - 218; Bacteria - 12272; Metazoa - 204; Fungi - 782; Plants - 267; Viruses - 1; Other Eukaryotes - 6348 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G57060.1

Model type: Protein coding
Short Description: binding
Computational Description: binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1); Has 13948 Blast hits to 8962 proteins in 742 species: Archae - 66; Bacteria - 1309; Metazoa - 5536; Fungi - 1705; Plants - 572; Viruses - 208; Other Eukaryotes - 4552 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G57060.2

Model type: Protein coding
Short Description: binding
Computational Description: binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1).
Link: InterPro Scan - TAIR