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52-1189-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8701564 [Map]; Strand: c
      • AT5G25180.1 - [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 14
        Distance: -4456; Region: intergenic
      • AT5G25190.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 5226; Region: intergenic
    Flanking Genome Sequence: 52-1189-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TAGGGTAAAA GAAACTATAT TCACAAAAGA GGAGTTAGGT 
    ACGGTTCAAA TAGTTCACGA TACATATATA AAATTATGCA ATCTTTTATG 
    GAAGTTAGAA ATAGAGGAAA TGAGTCAAAT TTAGAAGCAA AATGTTTTTA 
    TGATATGTGA GATGCATCGA AGAGTTCATT ATATGAGGGC ATTCTCCTTT 
    ATTCGCTGCA ACAAGGATGG TGAATATAAA GACGGATTAC AATTTGTCTG 
    AAGATTGTGT AGATGTCTGG GTCGATTTTG GGAAAGATAA TGCTCGGCCA 
    AGCCATTTAC ACAAGGATGA TGTTTGGCCC AAACATCTAC AAAATCTTTA 
    GAAAAATTCT AATACGTCCT TATATTCATC ATCTTTGTTG CAACGAATAA 
    GGAGAATGTC CTTCCCGACA ACTTTCATAT AACAGATTGT TCGATACGTT 
    TAACATATCA TAAAATCTTT GTGCTTCTAA ATTTAGTTCC TCTCCTCTAT 
    TTCTATCTTC TGGTAATGAC TGCATATTTT TCTATATGCA TCGTAAATTA 
    CTTGAACTGT ACCTACCGAC TTTTATGCGA ATGTAGATTT TTCTACCCTA 
    TCTAGGATAT TTTCATTAGT ACTACCCACG TTGTATGTAT TGCTTTTCCC 
    GTGATAATAC ATGACTTTGT AACTCTGCAA AATTACGCCT CTATACTAGT 
    GTGACCACAC TAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8701636 [Map]; Strand: c
      • AT5G25180.1 - [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 14
        Distance: -4528; Region: intergenic
      • AT5G25190.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 5154; Region: intergenic
    Flanking Genome Sequence: 52-1189-1 - 3-prime edge 
    ATTTCTACTA AAACTACCCA TGTGGTATGT ATCATTTTCT CGTGCTAATA 
    CCAAACCTTG TAAATCGGCA AAATTCTGTC TCTTTATAGG TGTGACAATA 
    TTAAACTTTA TAGATAAATT TATTTTTATC ACATATGGAA CAAAGACAAA 
    ATATCCCTCT GGGAGGGATC TCTTCTCCAA AAGAGATGAA TTTAACCTCA 
    TGTGAGTCTC GCCTCAGAAA GATGTAGGAC CTTTGCACTT GAACTTCCAG 
    ATATATAGAT ATATATATAT ATATATNANA AAAAAAAAAN ANANAAAAAA 
    AGTTTTNCCC CCCCTTTTNA AANNNNACNC GGGATTTTTT NNNNNGGGNN 
    TTTGNGGNGG NNTNNCNNAN NCNNTNTGCN CNNNACCNNG TTNAANACNN 
    CAAANNTCNC NTGTCCCCCC NCNCCCNAAA ANNAAAAANN TTTTTTTNNC 
    NAAAAANATA AAACCCTNTN NANTTTNNTT TNGGANAAAN NTTTTTTTTN 
    NNAAAAAANN TTTNGGGGGT NTNNNAAANA AAAAGNTNTT TTTTNNTNNT 
    NANAAANNNG NNNTTCGGGC GTCTNNTAAA AANATTCCAA AAGGGNNTNT 
    NTNGNANAAA ANGNGNNNGN NTNNCNCNNN NGTNTNCNCC CNGNTGNCAA 
    NANGNTGNNC NNGCCNCCNC NNNCATAAAA ANGGGNNGCT TCCCNGGTAT 
    AACNGCCCG

AT5G25180.1

Model type
Protein coding
Short Description
cytochrome P450, family 71, subfamily B, polypeptide 14
Curator Summary
putative cytochrome P450
Computational Description
"cytochrome P450, family 71, subfamily B, polypeptide 14" (CYP71B14); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: ytochrome p450, family 71, subfamily B, polypeptide 11 (TAIR:AT5G25120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25190.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational Description
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G15360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR