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52-1190-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8151127 [Map]; Strand: c
      • AT5G24100.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G24105.1 - [+] show detail - arabinogalactan protein 41
        Distance: -797; Region: promoter
    Flanking Genome Sequence: 52-1190-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AACCATAGCC GTACAACTTG TTCCTAACTG 
    CAACATCTGA AGCAACTTTG CTTCAACGTT AGGAGTTTTC ACAAGCTCCA 
    AATCAAACAC TTCACCTGTC CATTGTTTTG AAATAACNGT CATTCACCCA 
    TACCACTAGA TCTATCCCTT CCTTTCTATC ATCCATAATC GATCTTCCGG 
    TTAGAGTCTC CAGCATCAAT ATTCCAAAAC TGTATATGTC TGATTCTGGC 
    GTAGATCTCC TCGTGTCGGT TACTTCTGGC GCACGGTAAC GTAGTACCGA 
    TCTGGCTGAT GAATCTGCCC TCACAACCGG GTTGGTTAAC AGAGGTAAAC 
    CGGCTTCCGA TATACACCCA TATCCTTCCG AGTTCATGAA GACGTTAGAA 
    GATTTGATGT TTCCATGTGC GAGGTTTTGT GTATGTATGT GACCTAATCC 
    TTTTGCTACT CCGATCATGA ATCTCAATCG CGTCTCCCAG TTCAACGGGA 
    CGTGACCCTC GTCTGCGTTC TTGCCTGCAG GGAAAAAAAA AACTTTTTTC 
    ANANNCAAGA AACCAATNTT ATCAAATAGG GTTNCAACNG TTANTTTGCC 
    TTTATANGTN ATANAAAGTA TTGCCTTTGC AAAAATNTGA AAAANGTAAA 
    ACGTCCCATG AANACNAAAA GAGANACTGC CGTTAGAGTC NTAATCNTNC 
    ACCNTAAGCT TNCNGGCNGG GNCGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8180418 [Map]; Strand: c
      • AT5G24155.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-1190-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTGAACAC 
    TATATTTTTA ATAACAAAAT TATTCGATTT GTCACAAGTT TCTAATTTAG 
    TATAGAGTTT GGTTCTAGAT TCTCCGATTA AAAATAAAAA GTAAATGTAA 
    ATGTAAACGA AAGTTAAATT AAAAGAGACC AACCTTCAAG GCCAAGCTNC 
    CANNCCGGGC CGTNANNCAC GCGGGCCCTN TNGCTTTGNG TCTTNTAACA 
    AGGANACACT ACTTACGCCT TTAAGATNCG GTTGCGGTTT ANGTTCTTAT 
    ACTCAANCAT ACACATGANA TCAAGTCATA TTCCACTCCA AAACACTANC 
    CAAGACTTTT TCTNGCTTCT GAAAGCTACC ANCNNGGGCC GTNGANCACG 
    CGNGCCCTAT AGNTTTGNGN CTTNTANCAN GGAAACACTN CTTANGCTTA 
    TNNGATCGGG NNACGGNTNA AGTNCTTATN CCNNNTNNTN CNCNTGANAT 
    CNNGNNNTNT TNNACTCCNN NNCNNTNACC NNCNTTNTTN NNGCTTNTNN 
    NNGCTNCCNN CCNGGGCCGN NNNCCNCNCN TG

AT5G24100.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G53320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24105.1

Model type
Protein coding
Short Description
arabinogalactan protein 41
Curator Summary
Encodes a putative arabinogalactan-protein (AGP41).
Computational Description
arabinogalactan protein 41 (AGP41); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, inflorescence, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 16 (TAIR:AT2G46330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24155.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: squalene monoxygenase 6 (TAIR:AT5G24160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR