1. Home
  2. Mutant Lines
  3. 52-1196-1

52-1196-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19014594 [Map]; Strand: c
      • AT5G46860.1 - [+] show detail - Syntaxin/t-SNARE family protein
        Distance: -590; Region: promoter
      • AT5G46870.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -639; Region: promoter
    Flanking Genome Sequence: 52-1196-1 - 5-prime edge 
    CGTGTAACCG TCGGGATTAT GTTTTTTTTG TCTCGCCGGC GACTTCAAGG 
    AAGAAAAAGG TCGTGCTTAG AGCTATTTCT TTGTCGGGAA AGATTCTAAT 
    TAAATTTTAA TCATATAGTA GTACTTTACN GTTTAAAACA AAACAAAAGA 
    CGTGACATAA TCACTTTGAT CCACCACTAT CTGTCGTCCA CGTGTCCAAA 
    ACCGTTTCTG CTTTTCACAT GTAGTAAAAT TTAGTAACCT CCTCATTGGA 
    AATCTTGCGA AAAAAATGCT GATAAAGTAA TTACATGAAC ACTTTCCATT 
    ATTAAACTTT CACCTAAAAT AGTTAAAACT AAGGGCACCG AACCAAATTG 
    AACTGTTTAA ACCGTAGTGG AATCTTAGAT AAATTGATTT GATTGTATCT 
    GAACTAAACC AAACCGAATA AACTATTTAT TAAAATTTTA CATTTTAAAC 
    TACTTACACA TAGAGAAAAC AATATAATCA TATTAATATA TAAATTAACT 
    AAAAATTATT GTTTTTTAAC TAAAACTGAA TCAAATCTAA AATAAAAACA 
    AACTGACCCA AACCAAAATC TCAATAAACC AAACCAATTG TTTAATTTGG 
    CAAGAAAAAC AGAAACGAGG AGAGGTTACT AAATATATAG AAATAAAAGG 
    ATCAAAAAGG AAACAACTTT ATCTCAGCTT TTTCTTCTCA ATTAAAATCA 
    GTTTGGGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19015381 [Map]; Strand: c
      • AT5G46870.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-1196-1 - 3-prime edge 
    GTTACACGTA CCGGATAATT GTATTTAAGT TGAATCCGCT TTGTACTTTC 
    CTCACAGCCA AAGATTTTTC CTTACTAGGA TTTTCATTTT CTCTTCTGTT 
    TTCGTTTCAA ATTCAGAAAA TCTTCCGTTT CAATCCGGTT TATATCGGTT 
    TTTAGCAATG TCGGTGAGTA CTCATTCATA TCCGATTAAT CGTTCTCGTC 
    TCGTATTTGT AGAATTTCGA TCACCAGCTG CGATTAGATA TGTTGAAATT 
    GGCGTTTAGA ATCACTAATT TTGGGTTTTA CCTTCTTATG GATTACTTGT 
    TTGATAAATG TGATTAGTAT TTATCTAATT AGTTAAAACT TTGTGAATTT 
    ATTTTTGGAC ACAGCTTCTT ATATGGNTAA CTTTTAAGGN AATCNNAACT 
    TAACCAATTN NNNAACTTTA NGAGNAAGGG GNTTAACACT TTTGNGCNCT 
    CNGNNNNNNA ANNNTG

AT5G46860.1

Model type
Protein coding
Short Description
Syntaxin/t-SNARE family protein
Curator Summary
Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164
Computational Description
VACUOLAR MORPHOLOGY 3 (VAM3); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: in 7 processes; LOCATED IN: late endosome, trans-Golgi network transport vesicle, plant-type vacuole membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 23 (TAIR:AT4G17730.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46870.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 416 Blast hits to 410 proteins in 105 species: Archae - 0; Bacteria - 15; Metazoa - 8; Fungi - 115; Plants - 241; Viruses - 7; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR