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52-1198-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13075410 [Map]; Strand: c
      • AT4G25630.1 - [+] show detail - fibrillarin 2
        Distance: 0; Region: exon5 (CDS)
      • AT4G25631.1 - [+] show detail - U60.2F; snoRNA
        Distance: -153; Region: promoter
    Flanking Genome Sequence: 52-1198-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAGC CTACAAGCAT TCTGTATTTA GCTGGGTGTC
    TAGCATCCTC GATGATTGGA ATAACATTGG TTCTCTTCTT TGCCATGTTC
    ACCAAATCTC TACCACTTCT ATGAGAAAAC TCAACCGCGT ACACACACCC
    CTCCTATCAG ATCACAAAGG CAATATATAA GAAACTCCAA TACACGTCTA
    AAACCTGATA ATCACAACAT AAAGGACGGG TTCTGCTTAC AGGGCCAACA
    AGATCAGACA CATGAGAGAC TGTGGTTCCA GAAGCAGCAC CAAGGTATAG
    AACTTTAGCA CCAGGTTTCT ACATTGAAAC GGGAACAACA ATCAATATAT
    GAACCAAGTC TCGCAAACAA CAACAATAAG ATTCACACAA GCTGATGCTT
    ACAATCCAGA TGTTATCAAC ACCACCAAGA ATAGCAGCAG CCAACTTCGA
    ACGGAAAGGA TTCCAAACTC TGTATTCAGT CTTGGTTCCA TCTTCGTTCT
    GCAGATTCAA TCACAAGAAC CATTAAAAAC AAATTCATCA AAAGGAGTGC
    AAATACAAAC CATCAATCAA TTAATCAATC CTCTATAATA CCTGAACAGA
    GATTCTCTTC TCGTTGTAGA CAGCTTCACC AGGAACCAAA TTCTTGGTAA
    CAAGGGCATC TTCTTTACCC TTTGCAATGA ACACTCCTGC GTGTCTGTGA
    NGTT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13075420 [Map]; Strand: c
      • AT4G25630.1 - [+] show detail - fibrillarin 2
        Distance: 0; Region: exon5 (CDS)
      • AT4G25631.1 - [+] show detail - U60.2F; snoRNA
        Distance: -143; Region: promoter
    Flanking Genome Sequence: 52-1198-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGATGTTAT CTTCTCTGAT GTTGCTCAGC CAGATCAGGT TTGCTTCTTT
    TGTTTAACTC ACAATGAATG TCTAAATATT TGCCTCAAAA AGCT

AT4G25630.1

Model type
Protein coding
Short Description
fibrillarin 2
Curator Summary
encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.
Computational Description
fibrillarin 2 (FIB2); FUNCTIONS IN: snoRNA binding; INVOLVED IN: response to salt stress, RNA methylation, rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 1 (TAIR:AT5G52470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25631.1

Model type
Small nucleolar RNA
Short Description
U60.2F; snoRNA
Curator Summary
Encodes a novel C/D box snoRNA (U60.2f) encoded within the 5th intron of FIB2. Gb: AF228365
Link
InterPro Scan - TAIR