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52-1203-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6222283 [Map]; Strand: w
      • AT5G18660.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -55; Region: promoter
    Flanking Genome Sequence: 52-1203-1 - 5-prime edge 
    ATTGTAGCAA CTCGTTTGAT CTTCTTCTTC ATCCTCAGAA CACAGATAAT 
    ATAATTTCCA AAACAGACCA AGTATTTTAC GTTATTTCGT TTTTACCCCA 
    ATACTTTATC AATGGTGAAA TTCGGTGGGA GTTATGTGAT TTTATCATTC 
    TGATCCATAT ATTTGGTAAA AAAAAAGAAG ACAAAAACCT GTACCGTAAT 
    TCATCATATC ACTAATCAAT AATCAACACA TACATAGTAT AAAGAGAATC 
    CGAAGAAATC TTATGTAGAG ATGTGATCTG ATATATAGAG ATGACTTGTA 
    GTCGTAGGTC AACGGCACCG GACGTAACGA ACAGATGTAC GGCGTTCGTT 
    GGAGGTACAA ACGGCCATGA TGGAGAGACA AATGACAACA ATTATGACAA 
    GATGTGTTAG TAAACTCGAA CCTTCATCGT CACCACCACC ACAAGCAGAC 
    ATACACATCC CACCCATTCT TCTTCTTGTG ATCCTTAAGA CCCGATGATA 
    AGTTTTAAGG GAGATGTGAG ATGATTATGA AGAGAAAATT AAATGTTAGC 
    TGAGACGGAT CTGTCTTTAA TGAGTTTTTG ATTGGTACTT TTGCTTTTTA 
    AAATGGGTTT TGNTGGACTT GAATCAGCAA AACTTCGNGT TTTTAATAAT 
    TGAAATTGAT GATTTTAATT GGNGGTATTT NGGAGNGGNG GTCGAAAATG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6222168 [Map]; Strand: w
      • AT5G18660.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-1203-1 - 3-prime edge 
    GTCTACAATG GCCTCACACT AGGATCTTCA CTTTCTCGCA CTTTCCCTCT 
    CATTTTCCCG ATCATAGAAA CAGCATTGTA CAGAGATTTC AAAGAATGTC 
    ACTTTGCTCT TCCTTCAACG TATTCGCTTC CTACTCACCA AAACCCAAAA 
    CCATCTTCAA AGATTCCAAA TTCATTTCAC AATTTCAGGT AAAGTCGTCT 
    CCTTTAGCTT CAACATTCCA CACAAATGAA TCCTCAACGA GTCTTAAGTA 
    TAAGAGAGCG AGACTCAAAC CAATTTCATC TCTAGACTCG GGAATTTCAG 
    AAATCGCTAC ATCACCTTCA TTCAGGAACA AAAGCCCTAA AGATATAAAC 
    GTTTTAGTGG TTGGTTCAAC TGGGTACATA GGTAGATTTG TAGTGAAAGA 
    GATGATCAAA AGAGGGTTCA ATGTGATTGC TGTTGCGAGA GAGAAGAGTG 
    GGATTAGAGG CAAAAACGAC AAGGAAGAGA CTTTGAAGCA ATTACAAGGC 
    GCCAATGTGT GTTTCTCTGA TGTTACTGAG TTAGATGTTC TTGAGAAATC 
    TATTGAGAAT CTAGGATTTG GTGTTGATGT TGTTGNTTCC TGTCTCGCTA 
    GTCGTAATGG AGGGATTAAA GATTCGTGGA AGATTGATTA TGAAGCTACC 
    AAAACAGTCT TGTAGCTGGG AAGAAGTTTG GTGCTAAGCA TTTTGGTTTG 
    CTCTCTGCGA TTTGTGTGCA

AT5G18660.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll.
Computational Description
PALE-GREEN AND CHLOROPHYLL B REDUCED 2 (PCB2); FUNCTIONS IN: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR