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52-1210-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 283961 [Map]; Strand: w
      • AT4G00695.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00695.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskelet...
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00695.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskelet...
        Distance: -70; Region: promoter
    Flanking Genome Sequence: 52-1210-1 - 5-prime edge 
    GACGTTTCAG CGTAATTCAT CTTCTCTTGT ATAACACTTC CGATTCTAAT 
    TAGGGTTTAT CAGTTTGCAT CGCTCTTGCC ACTACCTCCG GAGTCTGTTT 
    CATTTGTTTA AGGTGAGTGA CCACATTGAT TTTAGAATGA TTATATATGT 
    ATGGTTTGAA TTCTTGCTTA CCTCTTGTTA GCTAAGGTTT TATCTTAACC 
    ATTAATTTAG TAATATAGGA TTCTTGTTTT CAAACAGTGA ATGGAGGAAT 
    TAAGCCAAAT CTTGAAGAAC AATAGGACCG ATGATCTCAC TTGGTTTTGC 
    TCTCTCTCAN AATCTGAACT GGTAAATATT GNTTAATCAT TCTCTTTCTT 
    TCTGCNGGNG GGAACTAACA TTGATCAANC ATTTTTTNAN GATTNGCTCN 
    TCANNTTAAA AAAGNNANAN ATTCNACNNG CCCCNNNNNN NNGGNCNNNA 
    ANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 272058 [Map]; Strand: w
      • AT4G00651.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -179; Region: promoter
    Flanking Genome Sequence: 52-1210-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAT 
    TTTTAACGAA CTCCTGAACT TATGATTCTC TTGTCTTTAG TGTTCTTGTC 
    TCTCTGTAGA TATCTAAAGC TGTGTCCTTT TTTTCTTCCA TAAATCTCAG 
    TGCTGTATAA CTACATTGTA ATGAACCCTA CCCGTTCATA CATTTGTTTA 
    AGAAGTCCAG CTATGTCACN TTACCACATT CCATGGAATC AATGCTTCTA 
    TTCATGTTTA AAATCCAGTT TAAAGCCTGC AAGTGTGAGT GTATCTAGTG 
    TTCATTGATA TTCCTCAAGA TCAAAGACTG CTAAATCAAA GATGTCAAAA 
    AGCTCTGTTT CTGTTTCGGA TTTGATTGAT TGTCAAGCTC AAGTTGGATC 
    TTCGGTGAAT T

AT4G00651.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00695.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00695.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00695.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3).
Link
InterPro Scan - TAIR