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52-1219-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11212006 [Map]; Strand: c
      • AT4G20960.1 - [+] show detail - Cytidine/deoxycytidylate deaminase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-1219-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTC CGTCAGCAGC GGTGAGAATA CAGCCGAAAC 
    CCTAACATCA ACGGTGGTAG AGAAATAGAG ACGACGACGA CGACGAGAAG 
    ATTGGATTTG TAATTGAAAG AGTCGGTTAA GACTAACCGG AAACCGTAAC 
    AGTCATAACC ATCGGTTTAC TAGGCTATTT TAAATTTTGT TTTAGACAGT 
    TATACATATC CGGTTTAAGA AACACCATTG AATTGGGGTC TCAAGGGCCA 
    ACAGACCTGT CTCAATAGAG ATAAGAAATA AAGAAACCCA AAACGCAAGA 
    AACGGAAAAA AGCATACATT GTTGATTGTA TTTGGGGTCT CGCCCTTCTC 
    AAGAATTGGG GTCTCGCCCT TCTCAAGAAG CTCGTTAGCT CGCTCCTCTT 
    CGTCAAGCTC TTCAGCTCGC CTTTAAGCTC TTCAAGCTCC TCGGCTCGTC 
    CTCAAGCTCC TCAGCTCGTC CTCAAGCTCC TCAGCTCGTC TTGAAGCTCT 
    TCCATCACTC AGCGACCAAC TCCTCGTCTA GCTATCAGCT CATCCCTCGA 
    CTGCAAAACT CATCTACCTC CTCGCCTAGC GGCAGTTCGT CCATTGACTG 
    CATAGTCCAC CTATCTCGTC GCCAAGCTCG TCTACACCTT CAGCAAACAA 
    CTCGGTTTGT CCAACTCGTC TCTCTACCAC GGTTCATCCA GCTCGTCGCA 
    CATTTGCCGG CTCGTCAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11212057 [Map]; Strand: c
      • AT4G20960.1 - [+] show detail - Cytidine/deoxycytidylate deaminase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-1219-1 - 3-prime edge 
    ACGGAGACGG CCCGAATCCG CAATTTAATC TTCGAGGTTC GATTTTAGTG 
    AAGAACAAGA TTCAATAGTG ATATGCAGAT CTCATGTCTC CCAATTTCGA 
    TTCCTTCGAT CACTCCTCGA ACCTCAATTC CACTCTTACC ATCACTCTCC 
    TCAAATCCTC GCCGCATTTT CAACCTCACT TCACTTCAGA GCCCAAATCA 
    CTGTTTCTTC AAAAGATTAC ATAAATCTCA GACTGGTTTC AGCAATCCAG 
    TTTTGGCTGC CATGAGAAGA GAAGAAGATG TTGAAGTCGA TGATTCGTTT 
    TATATGAGAA AGTGTGTGGA GCTAGCAAAA AGAGCAATTG GGTGTACAAG 
    TCCTAATCCT ATGGTAGGTT GTGTCATTGT CAAAGATGGT GACATTGTTG 
    GCCAAGGGTT TCATCCCAAA GCTGGTCAGC CTCATGCTGA GGTAACAAAA 
    ATTCAATCTT TCTTTGTTGG GTTACTGAAA ATGAGCAAAC TTTAAGTCTT 
    GCTTGTGGAA TTGTTGTTGT TGGCATTGGT ATGGTAGGTG TTTGCTCTTA 
    GAGATGCTGG AGAGTTAGCT GAGAATGCTA CTGCTTATGT TAGTTTGGAA 
    CCATGTAATC ATTACGGAAG AACACCGCCG TGTACAGAAG CATTGATTAA 
    GGCTAANGTG AGAAGAGTTG TTATTGGGAT GGTTGATCCG AATCCAATTG 
    NTTTTTTCTT CGGGTATTA

AT4G20960.1

Model type
Protein coding
Short Description
Cytidine/deoxycytidylate deaminase family protein
Curator Summary
encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis
Computational Description
Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR