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52-1220-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9171676 [Map]; Strand: w
      • AT2G21420.1 - [+] show detail - IBR domain containing protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-1220-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA AGGATTAACT TTGAAGATTT TGCGGTTCAC 
    CTACCCAAAG ATGTCAATGA GCAGAAAGAT GAGAGCAACT GAAGTGCTAG 
    GAGAGGTATT AATGTGAAAG TCATGAAATG TTTTCTTTTT CAGTTTTTCT 
    TTTGAAATTT AGATAATAAG ATAAGTCATG TAATGCTAAA GACCTCTTAA 
    GGAATTTGTA AGCCTATGGC ATTGTTGTTT CGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9171674 [Map]; Strand: w
      • AT2G21420.1 - [+] show detail - IBR domain containing protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-1220-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATC 
    CCATCTAATT CTGAGCCATC ATCATTGTCA TCTCCGTCAA CATCATCATC 
    ATCGCTGTCA ATATAGCCGT CGTCTTCATC ATCCTCATCG TCGTCATCAT 
    CATCGTCATC ATCATCATCA TCGTCATCAT CATCGTCATC ATCATCATCA 
    TCATCATCAT CATCATCATC GCAACCAGGA GANAGGCATC CTCGNTGGTT 
    CCATTCTTTC CCACATACGT AGCANAACTC AAATCCACAT CTACACNATG 
    CACACACAAA AACATTGTGA AATACAAGTA TTCATACGAT TTGAAGNAGG 
    CTTAATTGGA TGCGATATAT ATATATACCT GCAAGTNATG TGGNTGCNAC 
    CTTCAAAAAG TNCAACCAAG TTGCTACACT GGACACATTG ACGCCACTTC 
    TTCTTGTTTG CTAGAGACTT GAGCTNGACA TCATATAGAG GATNAGGGTT 
    AAGTTTNTTG TAATCAACAC ACGACANACC AGCATGCGAT GGTACTTTGC 
    AGTCNATGCA GAAGAGTCTA CAGCATTTGA TACATGCCCN GGACATTGGA 
    TTGGNCGGTT TCACGGNAAA GCGCGGTTNT GGACATCAAC ATTGAGCATC 
    TTNNATGNGG GCAANAGATT NTGNNCCGCA GNCGGAACTA AGTCCTCTTC 
    ATTCTTTNGT TNNAAAACTN AATNANATNT GGGGGNAAAA ACCNTGCTAC 
    NGNTTNTNAA ACGNGAGCTN ANAGTNGNAG GAAAAAGAAG GNNTGGGG

AT2G21420.1

Model type
Protein coding
Short Description
IBR domain containing protein
Computational Description
IBR domain containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G37560.1); Has 87308 Blast hits to 18333 proteins in 957 species: Archae - 370; Bacteria - 41195; Metazoa - 14245; Fungi - 8075; Plants - 4321; Viruses - 1278; Other Eukaryotes - 17824 (source: NCBI BLink).
Link
InterPro Scan - TAIR