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52-1221-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 68159 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 2680; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 1114; Region: intergenic
    Flanking Genome Sequence: 52-1221-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATTGTGA TGAAGGGTGC CTTGAGACGA GAGAAAAGAA CATGTTTTCA
    CCACTTTACT TACTTCACCC TCACGAAGTT AACACACACA TATATATTAT
    TCCAACATAC CTAATATTAT ATTAATATAT CATGAAACTT GAAAATGTGT
    TGGTGTATTT GTATGTCATC CATTTTTTTT TTNTAATTNA ANGTTAAAAT
    TTATTAAAAA ANCGTNTTTN CAAATNAGTC CAANCNTTTT AAAACAGNCN
    AAAAANAAAT NTTATCTTNT TTNTNGGCTN GCAAACCTAN CTGGGANGCC
    ACTCGCNTNC TTNAANGCTC CTCCACTTTN GATCGGGCAA NCCANGCTTC
    CANCCNGGGC CGNAANCCNC CCNGCCCCTA NAAAANAANT NTNNNTTGGG
    GNCANNTNTT TAACCGNNTT TNAAANCNTA NAGGGCTCCN NATNNTGNNG
    GCNTNNNTNN GGNNNCCNNG NNNGANNACN CNAGNCNNNN NACNNATNNG
    GNCTTGGNCC NACCNTNAAN NTNACTTNGG GGCNNGNNAA CCGCCTTNNN
    NNNNANG
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 68256 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 2777; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 1017; Region: intergenic
    Flanking Genome Sequence: 52-1221-1 - 3-prime edge
    ATAGTTAGGA GAAAATTTAC ATTATTATAC AACCTTTATA AAATGAAGAA 
    GATTTCAGCT AATTTGTTCT CCTAAATCGG GGTTTGTATG ATGAACAGAA
    TCGTGCTTTG CCATAATTAG AGGAAGAAAC AAAAAAGTCA GCTAAATATA
    TTAATCTTGT CAAACAATAA TTTATATTGA AGGATGACGT GTTAGAGTTT
    GTATGCATGT AACCATATAT AAATGATTGC GTCGTTCATT TTGTATTAGA
    TTTTAGGATA ATGATTAGTT AGATTAGACA AAAATTGATC AATTATTATT
    AGGAGATCAC ATGGGACTGA TAAGGATAAA GAAAAACAGA GAAGATTTCT
    TCATCTCATT AGAGCCAAAG TAATAATAAT TATGATTAAA AAAACCAACC
    AAGATCGGCG GGAAGTAATT AACAATTACC ACAATATAAA GTTGGTAAAG
    GAATTTTCGT ATTTCTTAAA TCATATACAT TTCTTTAAAC ATAATTTAAC
    TCTCATTTGA TCATTGACAA CACATTATTA TGATAGTTTT GCTCGTGGCA
    ACTAGGATGA GAATT

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR