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52-1225-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23290812 [Map]; Strand: w
      • AT1G62870.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -4052; Region: intergenic
      • AT1G62880.1 - [+] show detail - Cornichon family protein
        Distance: -1117; Region: intergenic
    Flanking Genome Sequence: 52-1225-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATAACG TTTGTGAGTA GAGCTTGCTT GATCAATACA
    AACAACAAAA AGATGAATTT ATAATTATAT ATTATACTAT ATAATAAAAT
    ACAAGTCACA AAAGCATATG TTTGGAATAA ATTATTGTTA TGAACTTGGA
    TAGTTTCATT CTTTTTGACG GCAAATAGTT ATCATTCATT TTTTGTATCA
    TTCAGTCTTT AATGGTTCCA GGTAAGTTGC AAAAGAAGTA AGCAATATTC
    GTGTATTCTC TAGAGATTTT TGACGGCAAA ATAGTATCAT TCATTTTCTT
    TAAAGACTAC AATTTGATTA GATATTAATA GATTAAATGG AGTAGTAGTT
    TTTTTTTCAA AGATGATTTT AACTAAAGAT TATTCTTTTC ATTTTGATTG
    TTTTATTTGT ATAGCTCAAA ACTTTGTATA TAAAACATCC TTCTTGATTA
    GTAAATTTCG CATTTCAACA AAAATGGAAT AATGTTGTGC GACGATTAAA
    TGGAATAGTT AAAATGATTA AAGAAATGAC ACTCGTTGAG CCATGANATT
    GATGATTAGT TGATTACCAC CTACGTGTAC GGTGTGGATC TACTGCATAC
    GTGCAAAATG TTTTCCATGA TTTTTCATAA TGGTGTTTCT TTATGAGTTT
    ATATATCAGT AACTAGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23290840 [Map]; Strand: w
      • AT1G62870.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -4080; Region: intergenic
      • AT1G62880.1 - [+] show detail - Cornichon family protein
        Distance: -1089; Region: intergenic
    Flanking Genome Sequence: 52-1225-1 - 3-prime edge
    CTTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCNN 
    AACGGANTAG GGGTGGNGNN GAAAANGCNT AGGCNAGGCG NTGTGTAGTG
    GAGAACNGAT TCAGAGTGTC ATGACAAGAA TCTTGNTGGG ATTTGTGAGA
    CTCNTGAATA TGACCNTNNN AGGGCCGCNG ANCATNCTGT GNNATTATNT
    NACNNGTAAT CATCTTAGCN TACAATTCAA AATTTTCTCT CTAAAATACA
    CAGTATGCCG ACATACATAA AAACACAACC ATCTATTTAA ACAAAAAAGT
    AAATTACAAT GCTATATTTC ACTTAACAAG GGCTAGTTTA GTTTCAATGG
    GTCATAAACT TATGATGTTA AGAACTTTTA AGCATGTAAT CTAATGATGT
    ATTCAAATCT AAATTAGTCT GAAATTCATT TTTATATTTG GTTTCAAACT
    GTACATATAG TATTACTAAG AGAAATACAG ACTTTATGTT ATATTTTGTT
    ACTAATTTTG CTAAATCCAA CTTACCTTCA AGAGAGCTAG TCACGTAAAC
    TTATGAAATC ATTGGGTTAC TATAATACCA GTAGGTAGTA AGTAGTATTT
    ACTATNTTAG TA

AT1G62870.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62880.1

Model type
Protein coding
Short Description
Cornichon family protein
Computational Description
Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1); Has 615 Blast hits to 615 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 159; Plants - 94; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR