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52-1225-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23290812 [Map]; Strand: w
      • AT1G62870.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -4052; Region: intergenic
      • AT1G62880.1 - [+] show detail - Cornichon family protein
        Distance: -1117; Region: intergenic
    Flanking Genome Sequence: 52-1225-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATAACG TTTGTGAGTA GAGCTTGCTT GATCAATACA 
    AACAACAAAA AGATGAATTT ATAATTATAT ATTATACTAT ATAATAAAAT 
    ACAAGTCACA AAAGCATATG TTTGGAATAA ATTATTGTTA TGAACTTGGA 
    TAGTTTCATT CTTTTTGACG GCAAATAGTT ATCATTCATT TTTTGTATCA 
    TTCAGTCTTT AATGGTTCCA GGTAAGTTGC AAAAGAAGTA AGCAATATTC 
    GTGTATTCTC TAGAGATTTT TGACGGCAAA ATAGTATCAT TCATTTTCTT 
    TAAAGACTAC AATTTGATTA GATATTAATA GATTAAATGG AGTAGTAGTT 
    TTTTTTTCAA AGATGATTTT AACTAAAGAT TATTCTTTTC ATTTTGATTG 
    TTTTATTTGT ATAGCTCAAA ACTTTGTATA TAAAACATCC TTCTTGATTA 
    GTAAATTTCG CATTTCAACA AAAATGGAAT AATGTTGTGC GACGATTAAA 
    TGGAATAGTT AAAATGATTA AAGAAATGAC ACTCGTTGAG CCATGANATT 
    GATGATTAGT TGATTACCAC CTACGTGTAC GGTGTGGATC TACTGCATAC 
    GTGCAAAATG TTTTCCATGA TTTTTCATAA TGGTGTTTCT TTATGAGTTT 
    ATATATCAGT AACTAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23290840 [Map]; Strand: w
      • AT1G62870.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -4080; Region: intergenic
      • AT1G62880.1 - [+] show detail - Cornichon family protein
        Distance: -1089; Region: intergenic
    Flanking Genome Sequence: 52-1225-1 - 3-prime edge 
    CTTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCNN 
    AACGGANTAG GGGTGGNGNN GAAAANGCNT AGGCNAGGCG NTGTGTAGTG 
    GAGAACNGAT TCAGAGTGTC ATGACAAGAA TCTTGNTGGG ATTTGTGAGA 
    CTCNTGAATA TGACCNTNNN AGGGCCGCNG ANCATNCTGT GNNATTATNT 
    NACNNGTAAT CATCTTAGCN TACAATTCAA AATTTTCTCT CTAAAATACA 
    CAGTATGCCG ACATACATAA AAACACAACC ATCTATTTAA ACAAAAAAGT 
    AAATTACAAT GCTATATTTC ACTTAACAAG GGCTAGTTTA GTTTCAATGG 
    GTCATAAACT TATGATGTTA AGAACTTTTA AGCATGTAAT CTAATGATGT 
    ATTCAAATCT AAATTAGTCT GAAATTCATT TTTATATTTG GTTTCAAACT 
    GTACATATAG TATTACTAAG AGAAATACAG ACTTTATGTT ATATTTTGTT 
    ACTAATTTTG CTAAATCCAA CTTACCTTCA AGAGAGCTAG TCACGTAAAC 
    TTATGAAATC ATTGGGTTAC TATAATACCA GTAGGTAGTA AGTAGTATTT 
    ACTATNTTAG TA

AT1G62870.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62880.1

Model type
Protein coding
Short Description
Cornichon family protein
Computational Description
Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1); Has 615 Blast hits to 615 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 159; Plants - 94; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR