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52-1237-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20409373 [Map]; Strand: w
      • AT5G50150.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -2642; Region: intergenic
      • AT5G50160.1 - [+] show detail - ferric reduction oxidase 8
        Distance: -6398; Region: intergenic
    Flanking Genome Sequence: 52-1237-1 - 5-prime edge 
    GTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTCAG AAAGACGACG ATGATATTTT CCTTACACAT 
    TGGTGACGTA TCTATTATAT TGCCTATGTG AGGACATTAC AAGTGGCTGT 
    AATGGAGCAC TCAAATCAAT TATCTATGAC TGTATATAAA TTCCCTACTA 
    ACATATTTGG TGCCAACTTT GGGGCGACCA AGATGGATGA TGATCATTAG 
    GTTCCTCTTT TGCTTTTTTG AACTTTTAAT ATGGAGACCA TGTGCTTTGT 
    CTTTTTTCTT CAATTATTTC AGTGCTTTAG CTAAATAATA TATATCATTG 
    ACAAAATTTC TATCCATAGG ATTTCAGTAT AAGTAGTATT CACAGGGTTA 
    TATGTTGAAC TTAAACCAAG AATAGTTATC CACAATTTGG ACCTATACTG 
    AATTGTAATA AACGAATAAT ATGTAATTTC AGCAACATTA GATGAGATAA 
    TATAGAAGCA TTTTAACATT ACATTAGAAA AAAAGAGAGG ATAATATAGA 
    AGCAAACTAC TTAATATGGT AGTTTGGTTC AAGATTCGTT ATACTAGTCG 
    ATGCAAGCAA GTGAGTCCCG CCCATGAGAC CGAGTTTCGT CGACTGCAGC 
    GGCATATTAA CTACTTTCAA GTGTTACTTC CACTATCAAA AACTTCAAAA 
    AATGTTATAA GATAATTTGA TTATAAAACC ATTAAAAGTG TTTTAAAAAA 
    CTAACAGGAT TTGGATTTCG ATATAAGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20409373 [Map]; Strand: w
      • AT5G50150.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -2642; Region: intergenic
      • AT5G50160.1 - [+] show detail - ferric reduction oxidase 8
        Distance: -6398; Region: intergenic
    Flanking Genome Sequence: 52-1237-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CTTTCTATCT GTTTGTACCT AAGTGGTGGT ATTCTAGTAT TTGTTGGGGC 
    ACTGACGTTC TCAAAAATAA CATAAAATTT TAAAACAATC ATGGATTCTA 
    AAATCAAGTT GTAATGTGTT CTATGTTCTA CATTTCTAGA TTTCATGTCA 
    AAGTATGAAA TTTATATGAT TAGTTAATCA TCTAAATTCT AACCTGATTC 
    CGGAAAGATA CCACAGATAA GGAGCTTGAT TAGCTAAGAG GTCAAACTCT 
    TTTTTGGTTT TATTTATTTA TTTATTTACA TTTAGAACAA AACCATAAAT 
    CATCAGTTGC ATGGAGGCTT TTTCGAAGTA CGATTTCAGC TTTTATAGTC 
    ATAATTAATC GGAATTTAAT TAGCTCTCAA AAGCATAAGG AAACACCACA 
    GAGGTGCGTG GTTGTATGAC AAAAAAATCA TATCAGAAAC ACGATGAAAT 
    CTTGCCTTTC TAGTTTTGAA CTGTGGTGGA AAGTTTGTGT TTCCATTTCG 
    ATCGTTAATG CAGTGGAAGC T

AT5G50150.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G50160.1

Model type
Protein coding
Short Description
ferric reduction oxidase 8
Curator Summary
Encodes a ferric chelate reductase that is expressed in shoots and flowers.
Computational Description
ferric reduction oxidase 8 (FRO8); FUNCTIONS IN: oxidoreductase activity, ferric-chelate reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 1 (TAIR:AT1G01590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR