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52-1240-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2313786 [Map]; Strand: c
      • AT2G05970.1 - [+] show detail - F-box family protein with a domain of unknown function (DUF295)
        Distance: -4002; Region: intergenic
      • AT2G05980.1 - [+] show detail - transposable element gene
        Distance: 17; Region: intergenic
    Flanking Genome Sequence: 52-1240-1 - 5-prime edge 
    ACTACTTTGT AGTATTGGTT TCATACCCGC TGCTAGGAAA ATCTCGTTTT 
    CAATCTCTTT GACAATTTTG AATTTCTCTA AACTCATGAA GCATTCATTG 
    TAAAAACAGT CTTTTTTTGG TTGAATATAA TTTTACATTC TTTCAAAAAA 
    AAAAAAAAAA AAAAGNNNNC CCNNGGGGNC CGAAANNNNC CGGGGGCNNA 
    AANTTCCCCC CCGGGGCGGG GNNCCCCCGG GNCCNNNNAA AAAAAGGGGG 
    GGGGNNNNAA GGGGGNNTTC CNNANNNNNC CCNGGAAANN NNGNNNTTTT 
    NNNNCCCAAA ANNNCANNCN NCCNTTTTTT NGNTTTTAAA AANCCCCCCC 
    CNGGGNNGGN NANCCCCCGG GCCCNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12613130 [Map]; Strand: w
      • AT1G34500.1 - [+] show detail - MBOAT (membrane bound O-acyl transferase) family protein
        Distance: 467; Region: intergenic
      • AT1G34510.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 2603; Region: intergenic
    Flanking Genome Sequence: 52-1240-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AACCCACCAT GGAGTCTTGT ATTCCCTGAC CTTTGAATCG TGCTGAACCG 
    GTTTCGAATA GTTTTATCAA TGAACTTAGC AAGTTTCGCA GCAGGGATAG 
    CAGTTTCCCC GTGTCGCCTG CAGTTACGTT CTCTCCAAAG ACTATGGATC 
    GAAGCT

AT1G34500.1

Model type
Protein coding
Short Description
MBOAT (membrane bound O-acyl transferase) family protein
Computational Description
MBOAT (membrane bound O-acyl transferase) family protein; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088); BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT5G55350.1); Has 1740 Blast hits to 1732 proteins in 634 species: Archae - 0; Bacteria - 1348; Metazoa - 0; Fungi - 35; Plants - 233; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G34510.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G26010.1); Has 4240 Blast hits to 4214 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 107; Plants - 4078; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G05970.1

Model type
Protein coding
Short Description
F-box family protein with a domain of unknown function (DUF295)
Computational Description
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G17565.1); Has 491 Blast hits to 474 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 491; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G05980.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR