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52-1244-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10033 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon2 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-1244-1 - 5-prime edge 
    AATACTGTCA CATAAAGTAC CTGAGTAAGT AACCTTCTCT GCTAAAATGG 
    ATTTGGCTTT AGCAATCGAA GACTCTTTAA GAACTACAGA CTTCCCTAGC 
    CCAGTCCTGA ACATTGGGAT TTCCCCAGGC ATCGCTTCTT CCCGTGCTAT 
    AAGCTNCCAT NNCGGGNNNA GAGANAGNCA TGGNNCAATN GAANCNGAGA 
    NGNGGTGANA TGCTGTANCC AGNTGATCTA NCTTCAGCGT GATATGTANT 
    TCTCTTGNAA TANGNTCTTA ANAGTTCCTT TTATTCGCGA GGAGCTGGAT 
    GAGAAGAGAC TCTANCGNTT CAGTTGGTGT AGGTACATGA TGGAATNCTC 
    TANTCTNAAC CCATNGNCTN TNACNCNGAN GGANCCATGN NTCTGNANAC 
    ANCCATCGGT GAAGACGGGC TAGGAATAGC TGCTCTNTGG GAATNNCNTT 
    TGTGTNGGNN GATANGNTNG TTAAACNCTT GNACNGGNTN GGATNACANC 
    TAAANNGANN GAAGNNNGGN GACNCGCANT GACNCGAGGA TGTGCGANAT 
    GGTGGAAAAA TGGTGGGTNC GTATATTGCC AGNCANACCA GGACNGATAA 
    GACCTGCGGA AACGCGTATG GGCNTGGGGG NANGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9917 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron2 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-1244-1 - 3-prime edge 
    ACAGTATTGA ATTCCCTTGA CTAGTCATTT GTTTCTGAAT TCCCTTGAAT 
    TGTTACTTAA TGTTGGTGAA AATGGTTTCC TGAAAATCTT TTGAATGTTC 
    CATGTTCTTG GCTACACTTT AGATTTGCNG GAACACAAAT TGCTCAATTC 
    CCCAAATGAG ACAAGTGGAT ACAGCTGAAA CTTTGCCAAT GTTCAGGACG 
    GCCTCGGGGA AATCTGTCCC TTTGAAAGAG TCTTCAATTG CCAAAGCTAT 
    GTCTATTCTA GGAAGTGATA AGATTATTGA CTCAGGTGTG TTCTTATCTC 
    CTCTTTTTTA AAGTCTTATT TCCAGTATAG CTGTGTGCGC GTTTACATAT 
    GAACTTGTNC TTTGTGCTGC TNCTNCNNNC ANCTNNCANG NNNTNNANNN 
    NNNNNG

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR