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52-1249-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17944556 [Map]; Strand: c
      • AT4G38300.1 - [+] show detail - glycosyl hydrolase family 10 protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-1249-1 - 5-prime edge 
    AGCAGCAGCC TCGACCACCG CTCTCAGGTT CACAAGTCTC TGTTTTCCGG 
    TTTAGTTCAG TTTGCAATTT GAATCTGGTT TTGGTTACAA TTTTTAGCCG 
    GTTTATTAAC GGTTTTTCGA ATTGATTTTG GCTGAAATAC NGGTATGTCC 
    GTTAGGATGA TAAAATACAT TCTCTTGGCT CTTTCGAATT GATTTCTCTT 
    CCAAGTTGTA CCTCTGTGTC GTCTCCATTT TTGTGGCCGA GCTTTTTGTT 
    TTCACAGATG GGTTTTATGG GTTTACATTG GTTTGAAATT CAAATTGATC 
    TCGGTTCGGT TTACTTTGGT TTAGAGAAGA AAACCCAAAA AATAAGACAC 
    GCGATGGATT TTTGAGAATG AGGTGCGTGG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17944630 [Map]; Strand: c
      • AT4G38300.1 - [+] show detail - glycosyl hydrolase family 10 protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-1249-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    GATATCAATC TCGGTGAGCC AGATTGGGAG CTGGAGCGTA GCGAGTTTAT 
    CGAGGATGGC TCTCATCAGC GCTACGTTTG GCGTCGTGAA GTGACCCTCG 
    AGACCGATTC CGTCCATCCT TATGCCGTCG TACCGTTGGA GTTCCCTCAC 
    CCTGGCGATG TATTCGTCAA CCGTTGACTT CTCGTCGCTG CAAGTCTCCA 
    CCACGTTGAA ATCATTGAAG AACAGAGTCG CCAACGAGTC AATCTCACGA 
    ACCGCGGCGA AGAACCCGTA CGACGTTCTT CCCCAGTCTG CTCTCGTAGA 
    AGTCGAAGTG AAGCATCTCG TTGCTCACGT CCCAATGCAC GAACTCTCCT 
    CTGTACCGAG TCATTAGACT CTTGATTCGC CGGTTAACCG CCGACCGGAG 
    ATCTTCGCCG GTTAGATTAC GAACCCAGTC GGGATTGTAT TTGGGATC

AT4G38300.1

Model type
Protein coding
Short Description
glycosyl hydrolase family 10 protein
Computational Description
glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 10 protein (TAIR:AT4G38650.1); Has 1908 Blast hits to 1902 proteins in 430 species: Archae - 10; Bacteria - 1128; Metazoa - 20; Fungi - 351; Plants - 265; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR