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52-1253-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22529423 [Map]; Strand: w
      • AT3G60950.1 - [+] show detail - C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase
        Distance: 0; Region: exon20 (CDS)
    2. Chromosome: 3; Position: 22590604 [Map]; Strand: w
      • AT3G61030.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon17 (3UTR)
    Flanking Genome Sequence: 52-1253-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG ATAACGATAC ATTCCAACTA ATGATCCAAC 
    GACACCGTTT GGAAGCATCA AGGTATATTA AAAAGTAAGT TTCTTCATAA 
    GCACGGATCG ACACATAGGC TAGGGTTTGT TGTCTATATA TTAATCCTAG 
    GTTCGATAAT ACTGCACCAT ATCATTTGTA GTATATAAAT AACATGGAGA 
    TAAAATTATG AAAGACTAAT AAAAATAATT GTACGCNTTT CTCGAGGGTG 
    TCAGAATAAA TTGGTTCGGC CTTGTGCAAG GTAAATCCCA ACGTCTCGTC 
    CATGTTCAAA TCCTCAGGAA CGACCTCGTT TTTTACGTTT TTAGGATACC 
    ATTCAAACGA ATAAATAAGT GAAGCAAGCA TGAGAGGTAC AATCCTCAAA 
    GCCAGTGATA TTCCAGGGCA TATTCTTAGT CCAGCTCCAA ACGGTATCAT 
    CTCAAAATCT TTACCTATCA TCTCAATGTC TCGTCCCAAG AACCTCTCTG 
    GCTCAAACTG TTCCGCATTT TCCCAAACGG TCGGGTCTCG TCCTATAGCC 
    CAAGCATTCA CCAGAATCTG AGCATTTTCA GGAATGGGGT ATCCTAAAAT 
    CTCCAAGTCT GACTCAGCTT TGCGTGGGAT TAGAAATGGA GTCGGTGGGT 
    GCAAACGGAG AGTCTCTGTT ACAACAGCTT GCAGATAAGG AAACTCTAAT 
    AGATTGGAGT CACGAACGTA ACNGGTT

AT3G60950.1

Model type
Protein coding
Short Description
C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase
Computational Description
C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G61030.1); Has 4425 Blast hits to 4326 proteins in 1442 species: Archae - 111; Bacteria - 2322; Metazoa - 578; Fungi - 318; Plants - 452; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61030.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 4067 Blast hits to 3968 proteins in 1320 species: Archae - 109; Bacteria - 2078; Metazoa - 577; Fungi - 310; Plants - 450; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).
Link
InterPro Scan - TAIR