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Mutant Lines
52-1258-1

52-1258-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 3671629 [Map]; Strand: c
- AT5G11480.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: -55; Region: promoter
- AT5G11490.2 - [+] show detail - adaptin family protein
  Distance: -159; Region: promoter
- AT5G11490.1 - [+] show detail - adaptin family protein
  Distance: -189; Region: promoter

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT CCAGATTACC ACCATCAAAA CGTAGCAGTT 
TTGATGTGGA TATTGTTTCC CCGACCTCCT CCGCATCCGT AAGTTCAGTC 
CTACATCCAT GGCTGCTCAC AGAATCTAAA GAGAACNTGC TCATAAGACT 
ATTACNTTAG AAGAGAATCG ATCAGATATG ATTTTAGCGC ATCTTCCAAG 
ATTCCATCTC TCAATCCTCG CGAAACCTTC TTTCTCTCTC TCTTCTTCGC 
ATTTCAGTTT CTTAAACCCT AAGCCTTCGG TAACAGTATC TCGAACCCTT 
TTCTCATTCG CGTCTAAATC GAATCTCGCC ACTGTTGAAC CCATACCATT 
ATCGGTCTCA GATTCAACCG ATTTGGATGA TGCACCTGTC GAGATTGCGC 
TCGACAAGCT ACCAGCCNGG GCCGTNGACC ACCGGGCCCC NTATANNNGG 
NNNNGANAGN TTANNNNGGN CGGGCNGNNG ACCACACGAG GGGNNAGGNT 
NNTNCCNTGA NCCGNNNAGN NGNNNTNTNN NCTGNNAGGC NANNAANCNC 
NNNGNNGNTG NTGNTGNNAC CNNANTNNNG

3 prime edge [+] show sequence

Chromosome: 5; Position: 3671636 [Map]; Strand: c
- AT5G11480.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: -62; Region: promoter
- AT5G11490.2 - [+] show detail - adaptin family protein
  Distance: -152; Region: promoter
- AT5G11490.1 - [+] show detail - adaptin family protein
  Distance: -182; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
ATGAACTTTC CTTATATTAC AATTTGCCCG CTCTATTTTA ACGATTGTAT 
CATTTCGCCA CTATCTTCTA ATTAGAGAGT AAATGGGTAA ATTAGAAAGA 
AAACAAAAAG TATAAGGAGT ATATAGCAAA ATCGGGTCGT TGGCATCTCC 
TTCCACCTCT CCAAGCACGG ACGAGACTTC GACCAGTGAA CCAAAATCTC 
TCTCAAATTT ATCACCCCGT GCTTCTGATC ACGGTGGGAT TCTCTCCGAT 
CGGTGACATA TCGTGGTTCA TACTCCGGTG GATCTCACGG CGTAATAATT 
TATCATATCT GAATCGCAAT CTTATTAACC ATGGCTCCTC CGGCCGCTTC 
ACAGCGTTAT CCGTCACCGT CCCAACCTTC AGGGTAACTT ATGCTTCTAT 
CCATCCTCTC TCGATCAATA GCACTGAATT

AT5G11480.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: barrier septum formation; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YsxC (InterPro:IPR019987); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G22870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G11490.1

Model type: Protein coding
Short Description: adaptin family protein
Computational Description: adaptin family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G11490.2

Model type: Protein coding
Short Description: adaptin family protein
Computational Description: adaptin family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).
Link: InterPro Scan - TAIR