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52-1258-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3671629 [Map]; Strand: c
      • AT5G11480.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -55; Region: promoter
      • AT5G11490.2 - [+] show detail - adaptin family protein
        Distance: -159; Region: promoter
      • AT5G11490.1 - [+] show detail - adaptin family protein
        Distance: -189; Region: promoter
    Flanking Genome Sequence: 52-1258-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CCAGATTACC ACCATCAAAA CGTAGCAGTT
    TTGATGTGGA TATTGTTTCC CCGACCTCCT CCGCATCCGT AAGTTCAGTC
    CTACATCCAT GGCTGCTCAC AGAATCTAAA GAGAACNTGC TCATAAGACT
    ATTACNTTAG AAGAGAATCG ATCAGATATG ATTTTAGCGC ATCTTCCAAG
    ATTCCATCTC TCAATCCTCG CGAAACCTTC TTTCTCTCTC TCTTCTTCGC
    ATTTCAGTTT CTTAAACCCT AAGCCTTCGG TAACAGTATC TCGAACCCTT
    TTCTCATTCG CGTCTAAATC GAATCTCGCC ACTGTTGAAC CCATACCATT
    ATCGGTCTCA GATTCAACCG ATTTGGATGA TGCACCTGTC GAGATTGCGC
    TCGACAAGCT ACCAGCCNGG GCCGTNGACC ACCGGGCCCC NTATANNNGG
    NNNNGANAGN TTANNNNGGN CGGGCNGNNG ACCACACGAG GGGNNAGGNT
    NNTNCCNTGA NCCGNNNAGN NGNNNTNTNN NCTGNNAGGC NANNAANCNC
    NNNGNNGNTG NTGNTGNNAC CNNANTNNNG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3671636 [Map]; Strand: c
      • AT5G11480.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -62; Region: promoter
      • AT5G11490.2 - [+] show detail - adaptin family protein
        Distance: -152; Region: promoter
      • AT5G11490.1 - [+] show detail - adaptin family protein
        Distance: -182; Region: promoter
    Flanking Genome Sequence: 52-1258-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    ATGAACTTTC CTTATATTAC AATTTGCCCG CTCTATTTTA ACGATTGTAT
    CATTTCGCCA CTATCTTCTA ATTAGAGAGT AAATGGGTAA ATTAGAAAGA
    AAACAAAAAG TATAAGGAGT ATATAGCAAA ATCGGGTCGT TGGCATCTCC
    TTCCACCTCT CCAAGCACGG ACGAGACTTC GACCAGTGAA CCAAAATCTC
    TCTCAAATTT ATCACCCCGT GCTTCTGATC ACGGTGGGAT TCTCTCCGAT
    CGGTGACATA TCGTGGTTCA TACTCCGGTG GATCTCACGG CGTAATAATT
    TATCATATCT GAATCGCAAT CTTATTAACC ATGGCTCCTC CGGCCGCTTC
    ACAGCGTTAT CCGTCACCGT CCCAACCTTC AGGGTAACTT ATGCTTCTAT
    CCATCCTCTC TCGATCAATA GCACTGAATT

AT5G11480.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: barrier septum formation; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YsxC (InterPro:IPR019987); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G22870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11490.1

Model type
Protein coding
Short Description
adaptin family protein
Computational Description
adaptin family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11490.2

Model type
Protein coding
Short Description
adaptin family protein
Computational Description
adaptin family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).
Link
InterPro Scan - TAIR