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52-1281-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15976881 [Map]; Strand: w
      • AT2G38120.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 52-1281-1 - 5-prime edge 
    GTTCTAATGC GTTTGTGGAG GGTTCTTAAA ATTATTTGTT CTTCTTTTGT 
    GTTTTGTGTT CGTATACGTG AAGGGAGTAA AAGTCACGAA AATAGTGTAC 
    TTTTTACACA CCCCTTTAAA TGCGTGCTAA GCTCTTAATT ATTTTTTTCT 
    CTTTTGGGGT TTTGTATTTT TGTTTTCACT CCTTAGTTTT TTAAAAAAAA 
    TTGAATAGTC GATAATATGT AGTGTGTGAT TTCTTAATTT GGTATTGTTA 
    AAACAATAGG CTAAGAAAAT GTATCGTCTT CTCTCCTTTT ACTTGTCTTT 
    AGTAACAAAA AACAATTCTT ATCTTATACA TTTATCCTAA CTAGACTTAT 
    ATAAACTATT TTACCATGAA CAATATCTTC CGATACTAGA TAATTCTTTA 
    GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15976765 [Map]; Strand: w
      • AT2G38120.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 52-1281-1 - 3-prime edge 
    ATTAGAAGAA CCCTGACTCG ATCTCTCAAA GACGGTGGTG TAAAGCGGAG 
    ACCGGGGCAT GTGCGGCGGC TGCAGCTGGT TTACATTGGT AACACTTGGC 
    AAAGAGACCA AAAGTGTCGA CTTGACGAAC AAAGTTGGTT ACACTAGCCC 
    ATCCACCGAA CCCAAATCCG ACTATAAGAA CCCAAACCAC CACGAAAGCA 
    TTCAACACGT ACATCGCCGT CCAGCTCGGC ATAAAGAACG GTGGCTTCTC 
    CGCCGCATTC TACAAGAAAG ATCCAAAACA CAAAAATAAT CAGAGAACCA 
    TTAAAGAAAT AGAGAGTGTG TAAGTGTTTT AGAGTTTTGG TCGTATAGTA 
    ATGGACAAAA TCCAAAGCT

AT2G38120.1

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Curator Summary
Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.
Computational Description
AUXIN RESISTANT 1 (AUX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUXIN RESISTANT 1 (TAIR:AT5G01240.1); Has 1256 Blast hits to 1251 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 283; Plants - 825; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Link
InterPro Scan - TAIR