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52-1294-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27208680 [Map]; Strand: c
      • AT1G72270.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR0...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-1294-1 - 5-prime edge 
    ATTGGAAGAG CTCTTGACCA GTTTTGTAGG TTACTTATCG AAAAAAAACT 
    GTTAGACATT TACAAAGCAT TATCCAACAC AAAACGTTTA CAGAATGCCG 
    CACTTTCACT CTTGGCTTCT ATCGTTAGAC NGTGGTCCAG GCATGGCATC 
    AGAAATGGCT AGGACATTTG ATTTTCATGG TTTCCCAAAA CAGGCACCGA 
    GGCGGGCTTT TGTTGAATTT GCAATATCAT TCCTTCAAGT TGGGAAGCCT 
    TCCTTATTAA AGTCTATCTT AGAGAAGAAG CAACTCTATT CTCAACTCCT 
    ACAAGGCCTT GAGGAAGACG ATGACGACAC TCTGGCTTCT GTCTTGTCTA 
    CCTTGAAAGA CAAGATCCTT GTTCAAGAAT CATCGCTTAG TCCTCGGCTT 
    ATGAGTGCTC TCTTTGGACC CAAAACACTA GAGCAGCTAG TCATCATTTC 
    AGAAAGAGAG GATGGTGGGA TTGTGAATGA GTTGGCCTAT GATGTTCTTG 
    TTAAAGTTTG TACAGACCCC TCTAATGGAT TGATGCCAGA TGCATACAGA 
    AAAGGCAATA TAAAACGACT ACTTGCCCTC ATGAAGAGCT TGAAAGCTAC 
    AGAAACTGGT TATCCCAGGG ATTTGCTTTT AGCCATTATT AGGGGTAGAC 
    CGTCTTTAGC TTCTGCTTTC TTTGATGAAT TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27208796 [Map]; Strand: c
      • AT1G72270.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR0...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-1294-1 - 3-prime edge 
    CTTCCAATAT CAGAAGATTT TCCCTCTGGA TGACTCAAAA TGGTCTGGAT 
    AAGCGAGAAT ATATAGGAAA GTCCTTGTTT TCCATGATGA AGATTCCATG 
    CCTCGAGAAG CTCAGTAAAG TTGGGTGAGC TCTGGAAATA AAGACGCAAC 
    AAATCGCTGC CAGTTTCTCC CTTTAATAAC TTAACAAAAT CTTTTGCAGT 
    ATCAGAGCAA AGCT

AT1G72270.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR