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52-1297-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10379536 [Map]; Strand: w
      • AT5G28463.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-1297-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGGT GGACGAGAGC AGGTACAAGG GCTATAATGG 
    CGGAGACGGA GTCAGAGTGA TTGGCCAAGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10377195 [Map]; Strand: w
      • AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-1297-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AGCTTTCTCG GTCGGCGAAG CAACAGAGTA GCCTTGCATA AACTTCCTCA 
    GCTTAACTAA CTCATCAGAA CCTGAGAGAC GCTCCATTAA AATCTCCATT 
    GTGATCTGAT TTGGTTCACA AGACTGTTCG ACCATCTCAT CCATCAGTTT 
    AAGTAATGTC TCTCCTTGGG TTTTCTCGTT AAGACACTTA AACAAGGCAT 
    TGTAAGTTTC AACATTAGGT CTCACCATCT TCATCTTCAT TTCCTCTTTC 
    AGAGAGAGCG CTTGCCCGAA ATTCCCCAGC TTAGAAAATG CGTTTATGAG 
    AATGTTGTAT ACTTGTATAT TACAGTGTTC GGATTGACCT TTGAGTGCAA 
    ACCCATGTCC TTAAAGAGCT TCAATGCTTC GTCTAATTCG CCGACTGAGC 
    AATAAGCGTC AATCACCGCT CCATATGTCG TGACAGTCGG GTCTAACCCG 
    TCTTCTCTCA TCTGCTCCAT CATTCTCTCA ACACTCTCGA AGTCCTTGTG 
    TTTACCGAAA AACGAAATCA GAGTGTTGTA AGTGATGGAA TCAGGTTTCT 
    TCCCTTCTTT TTCCATATCG GTTAGCATCT CATAGACTTT CTCTGCATTA 
    TTCTTATCAC AAAACAACCC AATAAGCATG TTGTAAGCCA ATAAGTCAAG 
    AGAAAACCCT CCTTCTTTCA GTTTCTCCAC CACTCTAATG GCGTCATGAT 
    CCCCGTCTAC TTGGCACAAT

AT5G28460.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28463.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR