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52-1301-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7970636 [Map]; Strand: c
      • AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-1301-1 - 5-prime edge 
    GTTGTGTGTA CCATATATAG GAATGTCAAG TGATGGTTGC AAAGTGGTTT 
    GATTGGCTTG AGTGTTGGAA GCAGTAGCAC CATTGTTGTT TATTTTTTGC 
    CATGTGATTG GTCTTTGTTT TGTTGAGATA CCTTTTGTTT TCCGCAATAG 
    TGATGTCATG AATGCTTGGC CTCTTTCTCT TTTTATCCTC TGAGTTGATA 
    TGTGCAAAGT ATTTTTGAGC ATGACTTGCA ACCTGAGTTG ATGTTCTTGT 
    CACTACACAG TGACGAGAAA TACTACGCCA ATCACCTTTC CCATATTTTT 
    TCAAACCATG CAGAAATTGT CTAGTTTCAT TAAGAAAACA AAAAATAGTG 
    TGAGAATCAA CACATTTTGA ATTATATTAT CAAACTGAAA ATGCAATAAT 
    GTTACTAGTG ACCACATGAT ATACAAATCA ACATATTCGG AATTTCACAT 
    TCAGTGACCT ATAAGTTTAC TATAAAAAAA ACATCCACAT ATAAAATATT 
    CTTTAAAAAC AAGTGAGTTT AGTAGGAACC TGTGTTCAAA AGGCTTCCAA 
    GGAACACCCC TTCGTCGTTT TTGCTTTAGT TTTGATTTAC CTTTGTGTTT 
    AGACTCATAT TTGCGATCGT TGCCACCTTC CAATATGCTT CTTTCTTTAC 
    CAAAAGCATT GTGATTTGGT TCTTCTAAAA AATCATCATA ATCTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7970752 [Map]; Strand: c
      • AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-1301-1 - 3-prime edge 
    CACACAACAA CATATGGAAT GCACAAGCCA CTCAAGTCAT TTCACAGCCA 
    TCACAAAACC ATCCTACATA TGATGCACCC ATCATATGGA ACACACAAGT 
    CGCTTCGCAA CCATCAGCCA ATATTCCTAT GTATGGAACG TCCACCATAA 
    GTCAACCAAT GGTTGGACCA ATGCTCTCAC CTTTTGGAAC AAACTTGAAC 
    CACTTGGCTC CATCTCATAT GACTTCTGGA GTTCAACATG ATTCAGTACC 
    TTACTACTCA GGTCCTAGTG CACCGATCAA CATGGATTCA ATAACATACA 
    ACATTGACTT ATATAACTAG ATCTCAAAGA TAGGTCTTAA ACTTCATGTT 
    TTGTCCTTCA TTTAAGGTGG AAGGATACTT ATTTCATCTT GTTGTTTGGT 
    ATGGGGATTA TTTGATGTTT TTTTCTTGTA TCATATGGTT TGGGGTGTAA 
    CATATATATA AACCTATTAA TTTCTTTAAG AAAACATATA AGCCTATTTT 
    TATTTCCAAT TAAACATAAA CTAAAAATCA AAATATATAT ACTCATAGTT 
    ATCATACATA CGTTTAGGGA ACGAGATATT GGTGTAACTA ACACTACTCC 
    TATACTCTCA TACAATGAAA ATTCTAATTA AATAATGATA TGAAAACAAA 
    TACTATTTGA CACTTCGATT AGAAAAATAT ATGTATCATT AAAATTCGAA 
    GACTAAGAAC TGA

AT5G23650.1

Model type
Protein coding
Short Description
Homeodomain-like transcriptional regulator
Computational Description
Homeodomain-like transcriptional regulator; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G08520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR