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52-1303-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18673315 [Map]; Strand: w
      • AT3G50350.2 - [+] show detail - Protein of unknown function (DUF1685)
        Distance: 0; Region: exon2 (CDS)
      • AT3G50350.1 - [+] show detail - Protein of unknown function (DUF1685)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-1303-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT GACTCGGATT CGGTTTCGGA TCTCCCGAAA 
    TCGCTGATCC AAGACTTTCC AACACGCTTC CCGCGTTAGA GCTTTACTTC 
    GCCGTTCAAA AAAGCTACAA CGACGCCGTT TCTAACAAAT CCGCTACNGT 
    CGTCGTCTTC CGACGGCGAT ACCAGTCCTC ACAACACCGT ATACCAAACC 
    AGTATGTATA AACATACACA CACACATATA TATACACATA CACGATTATA 
    AATTTATAAT GATCAAATTT CATTTGAATA GGTGATGATC CGCAAACGGT 
    GAAGACGAAG CTGAAGCAAT GGGCGAGAGT GGTGGCGTGC ACCGTGAACC 
    AATCGCCGCC GAGATGATAA TTTTAACGAC TGTTAAACGT TGTGGGGATA 
    AAGGTTAATC CGGAACAGGA TACGTAAATT GAGACCGCCA AACAGTCGGT 
    GGAGTCCAGT CAGCGTTGTA ATATTACACA CACAATAGTA CAATACTAAT 
    ATATGTTGGA CCCAACTTGT TTATAAGTTA TATTGTTTAT TGTATAATGC 
    ATGATTTGAT TTAATTTATC TTCTTTTAGT ATGTGCTATA TAATTTTATA 
    TATGCAACAG AACACAATTT GCAAAAGTAT ATTCTCAGAT TCTATTGTCT 
    GACTTTTGTC CATGGGAGAG TGGTGTTGGC TTCTCTTATA TTCGTTGCTA 
    AGCTNTCATA GTGNTTCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18673270 [Map]; Strand: w
      • AT3G50350.2 - [+] show detail - Protein of unknown function (DUF1685)
        Distance: 0; Region: exon2 (CDS)
      • AT3G50350.1 - [+] show detail - Protein of unknown function (DUF1685)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-1303-1 - 3-prime edge 
    ATCCGAGTTC GAAACTTGCT TTAAGCTCGT CGAGATCTTC GTCTGTCAAG 
    CTCTTACCAC GGCGGAGATG ACGGTGGCGG GAGATATCTT GACGTTTTGA 
    CCAAGCT

AT3G50350.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1685)
Computational Description
Protein of unknown function (DUF1685); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT4G33985.1); Has 199 Blast hits to 199 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G50350.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1685)
Computational Description
Protein of unknown function (DUF1685); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT4G33985.1).
Link
InterPro Scan - TAIR