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52-1309-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2943951 [Map]; Strand: c
      • AT3G09580.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G09585.1 - [+] show detail - pre-tRNA
        Distance: -661; Region: promoter
    Flanking Genome Sequence: 52-1309-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAGG AGCTCAATCT TCCACGGAAG ATCCGTACAT 
    TCGGAAGAAT CAAACTGGCG TCATCATCAT CGGCGCTGGA CTCGCTGGTT 
    TAGCCGCCGC AAACCAGCTC ACCTCCAAAC GAATCCCTTT CCTACTCCTC 
    GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2944001 [Map]; Strand: c
      • AT3G09580.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G09585.1 - [+] show detail - pre-tRNA
        Distance: -611; Region: promoter
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: -952; Region: promoter
    Flanking Genome Sequence: 52-1309-1 - 3-prime edge 
    AGCTCCGGAA AAGCGTTGAT ATCGGTGATT TGCATGGCCG CGGCGGCGAG 
    GGAAGAAATG AGAAGTAGAT GAGGTTGGGA GAGAGATCGC CACGGGCATT 
    TTAAAAGTTT GGATAAGGTT TTTCTCATTC CTTTACTTTA TTTTCCCCGG 
    GAAAATTATT TGTCTAGAAA AAATAATATA TATATATTCA AATAATTATT 
    TAAAAGATTC GAATAAGTCT TGTTTTCTTG ATTCTTTNCC TTATTAATCT 
    GNACAAACAC AAATTATGAA NACCAGAGTC CTAGNCCGTA GANACGGATA 
    CAGCCCAAGA GACNACCTTA GTCCTGCGGA AGATGAANAC CANTGAAGAG 
    TNNGAAGACT GGTGATTGCT TATAGGCCGT CTATTTTGGC TTATAATGAT 
    TTTAAATAAG TGTAATGGAT TNTGNTGCTT AATACTTCGT CTGCTATCTT 
    GTTTTAAATA TTTAAGAAAA TAAAACGACT TTCGGGATTG TCTTTTTCTT 
    TCTGTNCCAT GTCTTCTTAA CTGCTATGAG TAAAAGAGCT CTCCCANACT 
    CTTCTTCTAT CTCCAAAAGC TTNTTTACGC GGNACNCCAC TAGGGTGAAT 
    TACNACGCNA GGCCCGTANA NCCCGCGNNN NCCTNANNNT NGNNTNTNGG 
    NAANTNTTGC CNTTNGCCGG NTGANATTGA NCACANAGCT

AT3G09580.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2908 Blast hits to 2906 proteins in 704 species: Archae - 36; Bacteria - 1433; Metazoa - 261; Fungi - 51; Plants - 352; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09585.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: CGA)
Link
InterPro Scan - TAIR

AT3G09590.1

Model type
Protein coding
Short Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Computational Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G02730.1); Has 3024 Blast hits to 2931 proteins in 377 species: Archae - 0; Bacteria - 64; Metazoa - 1633; Fungi - 327; Plants - 888; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR