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53-2009-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22695369 [Map]; Strand: c
      • AT3G61320.1 - [+] show detail - Bestrophin-like protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2009-1 - 5-prime edge
    AATTCGTGGA TCTTTATCTT TNCAAAGATN CCGTTACNTA TGACTTTCTC 
    AGATTTAACA GCTTCTTGGA TGTTACTANG GNNCAAGATC GCNNAGCTCA
    TCTAAGGCCA ACATAGGAAA TGGTTCTTCT ATTAGAACAC CCACCTGTTT
    NTTTTNTTTT CCAAAAAGAA GGTTTAATGG TTAAGGATTC AAGCAAAAGA
    GGGTANGTAT GGAGGAGGAG GAGGACAAAG TACTCCTTCT ATGCNCAACA
    CAAANGCNGC TCTANTGAAA GTAGCANGAA C
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22700408 [Map]; Strand: c
      • AT3G61330.1 - [+] show detail - transposable element gene
        Distance: -357; Region: promoter
    Flanking Genome Sequence: 53-2009-1 - 3-prime edge
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAAG 
    CACTCATCAA ATGGTCGCCA TAGATCTTGA TTACCGGTTG GTGTGAGTGA
    TGTAGGTTGT CTTCCCGAGG GAGCTAAGAA CATGTGATGG CTTAGGTTAG
    CTTTGATATA TACGTATCGT ATAGAAGATA CAACACTTTT ATACCAGTTG
    ATAGGTAAAC NGTTTGTATA TCTTCCTTTT GTATATGTTT ATGTTGTATA
    TATAATATGC AGATTCAACT TTTTACACTT TTACATAAGT CATAGTTTGG
    GTCAGGAAGC CAGTTATACC ATATTTGCTT TATTTAGAAT CCATTTACTA
    TCTCTTGAAA CTAATTCTTT AGCCTTGTTG TAATGTTGTT ATTGCACCTA
    AATGAATAAG AATATGAAAC TCATCTAAGA TAATTGGCAA AACTGCTCAT
    GAAAAGAAGA GTTTTAAAAA GCTACAAAAC TTGAGCCAAA AGCAACCATG
    ACTCAGAAGT GTATGTCTAT TATTCATCTA CAATCTCGGA AACTAAAAAT
    TACCAAAAAT CTTATATAGA ACTCATATTA CCAAAAATTA AAAAGGATAT
    AAATAAACTA GGGTTTTGAG GGGTGGTACA AATTCGTTAG CTCTATTGTA
    GTTTGCTTAT TAAATATCAG ACACAATTCC CAAAGTCTGA TTGCTCGTGA
    AATTTTATAA ATAGCAAAGT ATTTGAGCTT AAACAACCAT GTCTTACAAG
    TGTTGAAATA AAAGACGAAT CCAT

AT3G61320.1

Model type
Protein coding
Short Description
Bestrophin-like protein
Computational Description
Bestrophin-like protein; CONTAINS InterPro DOMAIN/s: Bestrophin-like (InterPro:IPR021134); BEST Arabidopsis thaliana protein match is: Bestrophin-like protein (TAIR:AT2G45870.1); Has 1448 Blast hits to 1447 proteins in 512 species: Archae - 0; Bacteria - 1140; Metazoa - 0; Fungi - 113; Plants - 120; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61330.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.1e-252 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR