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53-2017-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 15083110 [Map]; Strand: c
      • AT1G40104.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron7 (CDS)
    2. Chromosome: 1; Position: 15083288 [Map]; Strand: c
      • AT1G40104.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron8 (CDS)
    3. Chromosome: 1; Position: 15084878 [Map]; Strand: c
      • AT1G40104.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron16 (CDS)
    4. Chromosome: 1; Position: 15086116 [Map]; Strand: c
      • AT1G40104.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 223; Region: intergenic
      • AT1G40105.1 - [+] show detail - transposable element gene
        Distance: -32768; Region: intergenic
    5. Chromosome: 2; Position: 3622062 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron21 (CDS)
    6. Chromosome: 3; Position: 13587180 [Map]; Strand: w
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 3206; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -14620; Region: intergenic
    7. Chromosome: 3; Position: 13590516 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6542; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -11284; Region: intergenic
    8. Chromosome: 3; Position: 13590872 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6898; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10928; Region: intergenic
    9. Chromosome: 3; Position: 13591228 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7254; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10572; Region: intergenic
    10. Chromosome: 3; Position: 13591940 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7966; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -9860; Region: intergenic
    11. Chromosome: 4; Position: 3951855 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1253; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 5327; Region: intergenic
    12. Chromosome: 4; Position: 3953990 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -3388; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3192; Region: intergenic
    13. Chromosome: 5; Position: 11734244 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -12680; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -5033; Region: intergenic
    Flanking Genome Sequence: 53-2017-1 - 5-prime edge 
    GTTGACATGT CTGAAAATAA ACCACAAAAC TAGATTAGTG TCGTGAGTTG 
    ATCAAGAGTT ACACTTGATT AATGTTTTCA ATTTGCAGAC AAGCAAAACC 
    AAGTTGCAGG TTTCGCAAAA CCAAACTGGT TCACGTGAAA ATGATTAAAG 
    AGACACTAAG TCTCGATGTC TTAGTGCTAG AATTGTTCAA CAATCTAACC 
    ACTTATTTCA ATTAAGAAAA TTCCAAACTA GAGTCTCGAG ACTTGTGTGT 
    TAGAAACGCT AAACACACCA ACTAACAAAA CTCTCTATTT GCATAATTAT 
    GAAAAACACA AACTGCAGGT TTCGTTAACT ACACGTATTT AAACAATTGC 
    AATTTATTTT AATGCCAATT GTTAACTAAT AAAACGTTCT TATGCAAACC 
    AAACAGTCCA AGCCAAATAA AAAACTGCAG GTCACGTTTT TAATTTGTTT 
    TCAATTTGCA GGAAATTGAA AGCAAGACAA AACAAGTCTC TAAGCTTCCA 
    TGGCGTNCCN AAAANCNCTN NNNNCCNTTT AGGCTTNNGN GTCTTCTAAC 
    NAGGGATACA NTTCTTACGC CTTTAAGATC NGATTGCGGA NTAAGNTNTT 
    NTACTCAATC NTACACATGA NATCNAGTCA TANTNNNACT NCAAACACTT 
    NNCCNANTTT NTTNNNNNNN CNNNGGCNAC NNNNNNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 12574136 [Map]; Strand: c
      • AT3G30835.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -2204; Region: intergenic
      • AT3G30839.1 - [+] show detail - transposable element gene
        Distance: -1495; Region: intergenic
    Flanking Genome Sequence: 53-2017-1 - 3-prime edge 
    ATGTCAACTG AGAACGTCAA CGTCTCAAAC GTCGATGAGG TCACCAACTG 
    TGGGGGTGAA AGTGAAGTTG AAATTCAGTT TGGTACTCTC ACTCTAGTGA 
    AAGTAGCGAC ACCTGAACGT GTGCAAACTG CAGCCCCTGA GCAATTTCAG 
    CTTCCAGCGG CAAATTCGGC AGGCCTCCTT CCCGACAAGT TCGATGGGAG 
    CTCATTTAAG ATATGGCAGA AAAAGATGTT GTTCTACTTG AGAACACTGA 
    AGCTGAGCCA GTACACGCAT GAAGAGAAAC CGATCCTCCC AGCGGACAAC 
    ACGGACCCTC GTGCGCTTGC GAGCGTTCAT GCGTGGGAAC ACGGTGATTT 
    CCTGTGTAAA GTATATATCC AAAGCCGCCT CTCCGATCCG CTGTACTATG 
    TGTACTCTAA TGTCAAGACC TCTAAGGAGC GGTGGGATTC TCTTGATAAG 
    AATGATGCGG AGAAGCT

AT1G40104.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 88 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 17; Metazoa - 9; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G40105.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 5.1e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G30835.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G30839.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.2e-11 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR