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53-2036-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 282116 [Map]; Strand: w
      • AT2G01630.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01630.2 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01640.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -853; Region: promoter
      • AT2G01640.1 - [+] show detail - unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; ...
        Distance: -888; Region: promoter
    Flanking Genome Sequence: 53-2036-1 - 5-prime edge 
    CNCNCGAGAA CAAAATCCAA CCAAGACAAA ATATATATCT ATAAAAAAAT 
    AGATATAGAG AAATAGAACG GATGAAAATG CATCCTGCAC NGTANTAAAT 
    CTTNAAAAGA ATCCAAATTA AGTAACATAN CTGGGAANAA NNNCANGTCC 
    TTCNCGTCAA CCGTACCTGG ACCTCTGATA TGTCTACACC GTCAGCATAA 
    GGCGGGTGAA TAATTGTTGA GACTTCTTCT ACCAGATCAC CAGACTGCAA 
    GAAAAATATT AATANNCNAA TNACCCTTGT GAAGTGCCNA GTTGTTGTTC 
    TGTTATCGAA TCCTACTGAC ATCGGCACAC ATCTTATATC CGACACAAAC 
    ATAAATTGTT TAATATCGAA GCAGTACACA ATATCATTGA CNATGTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 282000 [Map]; Strand: w
      • AT2G01630.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01630.2 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01640.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -969; Region: promoter
    Flanking Genome Sequence: 53-2036-1 - 3-prime edge 
    CTCGTGGGTT ACTTACTTGA GAGAACCTCG AGACCTGTNT TGTCGTTATG 
    CTTNNGAAGC AAATCAAAGC ATCTCTCCAA GATTTGAAGC TCCATCTATG 
    GCTGCCCTTC TTCTCCTTTT CCTTTTCCTC TTCGCAAGCT CTGCTCTCTC 
    TCAAGGTAAA CAATTTCTGA AATTTCTTGA CTTGAATCTT TAAATCAGCT 
    CTCTCTAAAG GTTGATTTGT CTATGCTACT CCACTACA

AT2G01630.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT1G66250.1); Has 2926 Blast hits to 2856 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 93; Plants - 2819; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01630.2

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT1G66250.1); Has 2147 Blast hits to 2131 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 5; Plants - 2133; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01640.1

Model type
Protein coding
Computational Description
unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01640.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR