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53-2040-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9498426 [Map]; Strand: c
      • AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -1113; Region: intergenic
      • AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 2080; Region: intergenic
    Flanking Genome Sequence: 53-2040-1 - 5-prime edge 
    ATCACGACCC TGAGCTCAAG TGAGCTAGTC ATTGTCACAT TTAGGATGTG 
    AAAGCTAATT TCTCTGGTGA TTCTTTTAGC TGAATTGGTT TGTGCAGGTT 
    TGCTTCAGAT ATTGCACCAA TGACCTAATA ATAATAATAA AAACATAATA 
    CACCATCAGT CGATTCCACT CTTTTTTCTT TCTTGCCGTC TTACAACGAC 
    CTTGTGATCC CTAGGAACAT GAAGGACATT GAGTAACTAC GAGGCAGTGA 
    AGACTTATGG GAAGTAGCCA AGCTGCACAA CCGTGAAACC TCTTTGCCTG 
    AGGTAAAATC TCATCTTACC TCTCTTATAA ACTCTCCATT CATTTGATTG 
    CTGAATTTGT GTGACATAAT ACAAATGCTC TGTTCTTCTT TCATCTTTGC 
    CGCCAGCATA TGGATTCAAA TATCACATAA AATGGTTTTC ATTGTTAGTC 
    AGAACATGAT ATAACTTTAA AATGTAAATT ACTGATAAAG TGATTTGATA 
    GATGATCGTG AGAGATGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9517743 [Map]; Strand: c
      • AT4G16915.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 53-2040-1 - 3-prime edge 
    GTCGTGATAG AGGTCGGTGA GTGGGACGGG TGGAAGCTGG TTTTGTATGT 
    ATGGGGCTGT GGTGGTGCTG AGTTATGTTG TAATCACTGT TTTTTACTGT 
    GAGTGTAGGA AACGCCACGG TAGCAGTGAT GCAATTGTTG CTGATGAGGT 
    TGCTATTTAA AAATTTAGTT CCAACACTTT TTTGTTGTTG ATAATTCTCT 
    TGTGAAATTG TGAAATACAT TTTTCTTTAC CAAATTTATT CATTGATTTA 
    AAGAGAGAAA AATAACCTTT GGTAACATAC ACGTAGAGAG ATATGTGTGT 
    TTCAAAAGAC AAGACTGTTA TATTTACATC CTTTTAGGAA AGCGAATTTT 
    TCAAAGAAGC AAAACAGAGA GAAGTAAGAA CAGAGTGCTT CTGCTGTTCT 
    GGACATGGAG CCATAAAAGG TTTCTAGTTC TCAGTAAGTG CTCCATCATC 
    TGCAGGAGAA AATGGCTTGT GTGAAAAACT AAGAAATCGT CTTGTTTGGT 
    CGATCCCACG TTCATTACAA AACAGAGTTG TAATACGTTT CAGGTTGCCT 
    TAACAATGTG ATAAGCTGTG GACACGGCTA AGGATC

AT4G16880.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16890.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary
Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description
SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16915.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR