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53-2065-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26111955 [Map]; Strand: c
      • AT5G65330.1 - [+] show detail - AGAMOUS-like 78
        Distance: 604; Region: intergenic
      • AT5G65340.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 1443; Region: intergenic
    Flanking Genome Sequence: 53-2065-1 - 5-prime edge 
    CTCTCGACAG AATCGGAGGT CTTCCGGCGA TAAGGTTCGT GGGTTTTGCG 
    TATCGTTTGT TGGGTACTCG CTGGGATTGT TGTTGCTGTT GTAGAATTGG 
    GTAATAGTGG GGAGTGCTTG GAGCAATGTG ATATCGACTT TCTTGATAAA 
    ACACAAGGGC TAGTTTAATT GCAGATATTC AATCAGCTCA ATCTTTATCT 
    TCTTCCTCAT ACCATTACTC AGAAACTACA CAGAGATTCT TCTTCTGCAA 
    AAAGTCTAGA GGCTTCACGA ACTCATATCC ACTCTCCATC TCCTTGTATA 
    TATTAGTTGA TTCAGACAAG AAGGATACTA AGTTGCAAGA ATTAAGGTTT 
    TAATATTATA ATTTGTTTCA TGCAAGTTTT TGTGAAAGAT TTTTTATGGA 
    AGTTCATATA TATATGTCAA TACTAACTGA AAAAAGTATC AACTTAAAAG 
    TAAAAACAAA ATCTCCACAA ATGGATTTGT TTTCTTAACA AAAAAAACAA 
    ACAAATGGAT TTGTTTTGCA GTTATAATGA CACTATAAAA TATTAAAAAA 
    AACAGTAGCA GAAGAAATCG GAAGCAGAAA CAGCTTCGAT CTCTCTCTGA 
    TCCGCTTGCT ACTTAACTAT TGACTGACTC TTAATGAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26112071 [Map]; Strand: c
      • AT5G65330.1 - [+] show detail - AGAMOUS-like 78
        Distance: 720; Region: intergenic
      • AT5G65340.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 1327; Region: intergenic
    Flanking Genome Sequence: 53-2065-1 - 3-prime edge 
    GTCGAGAGAG GAACACCACC TCGTAAAATA ACCGGGAATT TGGTACGATT 
    TTGTTTTTTA TTTGATTTGG TTCGCCACAA GGTTAATTTG GTCTCAAAAC 
    TCAATCCTTT CACCAGGTTT TCATGGCCCG GCCCAATATT AATTTTTAAA 
    GTCCATTTAT TTGCAATAAG GCCTATTAGT AATACCCAAT AAGCCGAAGA 
    TGCAGACGAA GACGATCATT ATTGAGAGAC ATGTATGACG CGTAAAATTT 
    ACTTCAGTTT GTGTTTTTGA GATTGTGGTT GGTTAATGGT TACTGCTCAA 
    GAACAAGAAA CATAACATGG TGTGGTGTCA GATTTATCAT TTTATGCTTC 
    CTTCTTGCTA CTAAGATTAT ATTACTTTTT GTTAAAGATT ATAAGGATTA 
    TTACGTTATC ACCCTGATTG AATAATCCAA GTTTTAGTTG ACAAAACAAA 
    AGGAAGAAGA ATAATTCCAA GTTTTATGCA ATATAGCTTA AATTTTTTGT 
    TCCTCTCAAA ATTCGATTAT CAAGTTACAA AAAAATGTAA TATTTTGCGG 
    ATCATCCAAA ATAATGAGTA GAATTTTGTG ATGTATTGAT CTATTTCTTT 
    GGCCAAAAAC AAAAGAACAT TGGAAAGAGA CAGAGAAAGT GGCAAGCTGG 
    TTGTCTTAGC TGTTCTTGAT TCCCTCTAAG CAAAAGTATA AAGCTCACGA 
    ATGAATGAAT AAT

AT5G65330.1

Model type
Protein coding
Short Description
AGAMOUS-like 78
Computational Description
AGAMOUS-like 78 (AGL78); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 52 (TAIR:AT4G11250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65340.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF617
Computational Description
Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT2G22460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR