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53-2080-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23496768 [Map]; Strand: w
      • AT5G58050.1 - [+] show detail - SHV3-like 4
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 53-2080-1 - 5-prime edge 
    CCACTGCAGA AACCGACATT TGGCCGTCGA AGATGCTAGG CCGAGAGAAG 
    ATGTTCTGGA CCACTGCTCA ATAATACAAA ACATGAAAAT GTGTGGTGGT 
    GGTGGTGAGC ATTGAAGGGA GGAAATGAAA GAGAAGAAGA CATACGAGTG 
    ACTTTGTTGA ATATGGTGTC GGCATCGTAA TCAATGACAA ACCAGCCCTT 
    GAGGTCCTGA CCGTTGACCT TGTAGGTCTT CTGGGCTTTG GGGAAGACCG 
    AGGAGATGGT GGTTGCATTG TCAAGTCTGA TATCTGACAA GCAAAGGCCC 
    ACACCGTCCT TAGTCATCTG AAGGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23496696 [Map]; Strand: w
      • AT5G58050.1 - [+] show detail - SHV3-like 4
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-2080-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    GGAGGATGTC CTTGGAACCA AGCCTCCCAA GTTCTGGTTG AGCGTTCAGG 
    TATCTCTTCA TCTCTTTGAG AACATGATTA ACCAACATAT GGAGCTTTTT 
    TGTTGATTCA TCAAAACAAC AAACAATGCA AATGTGCAGT ACGATGCCTT 
    CTACATGGAA CACAAGCTGA GCCCAGCCGA GTACCTGAGA AGCT

AT5G58050.1

Model type
Protein coding
Short Description
SHV3-like 4
Computational Description
SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR