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53-2081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19638867 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -189; Region: promoter
    Flanking Genome Sequence: 53-2081-1 - 5-prime edge 
    CACCTTTCCT TGTGGATGAA TCGAGGAATT CGGTTTTTCT TTTCAGAGAA 
    ATAAGGATTG AGAAACTAAA AAAATCAGAA GAAGAAAGGA AAGGAGAGAA 
    GAGATAAATT CGTTTAGTTT GTCCAAGTTA AATACGAAGG TTAAGGGCTT 
    CAGATGCCAA CAAATTGGTA GGCCCAATAA CATAATAAAC GAGGCCCAAA 
    AACTTCATTT GGATACTTAC TTATCAAATG TCTTCTTCGC CATTCTCTGC 
    TTAAACCCTA AACCAGCCTC CTTCTCTCTC TCTGTTAGCT GCGTTCTTCT 
    TCAAGCTAGC TCTCTGCTTG TACTCTAGAA TAATGGAGGA AGACTTCGTG 
    TTCGGCTGAA TGACCATCAA GT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19638983 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -305; Region: promoter
    Flanking Genome Sequence: 53-2081-1 - 3-prime edge 
    GAAAGGTGAT TCATCAATCT TGTGCTTAAC ACATAATGCA TGTGGATTGA 
    TTTATATCAG GCAAATTGGA GAATAATCTA CCCANGA

AT2G47990.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Curator Summary
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.
Computational Description
SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink).
Link
InterPro Scan - TAIR